Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP06_F_M18
         (913 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_05_0562 - 23307526-23307875,23308149-23308452,23308543-23308647     29   6.8  
02_05_0686 - 30900748-30902167,30903442-30904742                       28   9.0  

>01_05_0562 - 23307526-23307875,23308149-23308452,23308543-23308647
          Length = 252

 Score = 28.7 bits (61), Expect = 6.8
 Identities = 16/52 (30%), Positives = 19/52 (36%), Gaps = 3/52 (5%)
 Frame = +3

Query: 723 GXGSXPPKGGXRX---PXKSGGXPREKXXTQXPQGPXPXRXGWWXXPKGPPP 869
           G    PPK G +    P K G  P+ K     P+        WW  P   PP
Sbjct: 184 GPKPKPPKPGPKPKPKPPKPGPKPKPKPPKPGPKPKPGPPQPWWPIPFPKPP 235



 Score = 28.3 bits (60), Expect = 9.0
 Identities = 18/53 (33%), Positives = 22/53 (41%), Gaps = 1/53 (1%)
 Frame = +3

Query: 741 PKGGXRX-PXKSGGXPREKXXTQXPQGPXPXRXGWWXXPKGPPPXKKXKXXXP 896
           PK G +  P K G  P+       P+ P P + G    PK P P  K K   P
Sbjct: 172 PKPGPKPKPPKPGPKPKPPKPGPKPK-PKPPKPGPKPKPKPPKPGPKPKPGPP 223


>02_05_0686 - 30900748-30902167,30903442-30904742
          Length = 906

 Score = 28.3 bits (60), Expect = 9.0
 Identities = 13/35 (37%), Positives = 14/35 (40%)
 Frame = +3

Query: 681 PXTKNPXXXGXXXGGXGSXPPKGGXRXPXKSGGXP 785
           P    P   G   GG    PPKGG   P  + G P
Sbjct: 362 PSPPPPPPPGGKKGGPPPPPPKGGASRPPAAPGVP 396


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,696,380
Number of Sequences: 37544
Number of extensions: 293571
Number of successful extensions: 490
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 438
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 483
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2588957540
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)