Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP06_F_M16
         (918 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC821.10c |sod1||superoxide dismutase Sod1|Schizosaccharomyces...    53   5e-08
SPAPYUG7.05 |||delta-1-pyrroline-5-carboxylate reductase |Schizo...    30   0.40 
SPCC320.08 |||membrane transporter |Schizosaccharomyces pombe|ch...    29   1.2  
SPAC19G12.14 |its3||1-phosphatidylinositol-4-phosphate 5-kinase ...    27   3.7  

>SPAC821.10c |sod1||superoxide dismutase Sod1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 154

 Score = 53.2 bits (122), Expect = 5e-08
 Identities = 27/47 (57%), Positives = 33/47 (70%)
 Frame = +1

Query: 406 HGGPSSAVPHVGDLGNIEAIENXGVXKVSIQDSXISLHGPNSIIGRT 546
           HG  ++AV HVGDLGN+E+ +  G  K +  DS ISL G NSIIGRT
Sbjct: 72  HGDRTAAVRHVGDLGNLES-DAQGNIKTTFSDSVISLFGANSIIGRT 117



 Score = 51.6 bits (118), Expect = 2e-07
 Identities = 31/66 (46%), Positives = 36/66 (54%), Gaps = 3/66 (4%)
 Frame = +3

Query: 207 KAVCVLRGD--VSGTVFFDQQDEKSPVVVSGEVQGL-TKGKHGSMCTNLVTTQTGCTSAG 377
           +AV VLRGD  VSG V F+Q D+ S V V  ++ G     K G           GCTSAG
Sbjct: 3   RAVAVLRGDSKVSGVVTFEQVDQNSQVSVIVDLVGNDANAKRGFHIHQFGDNTNGCTSAG 62

Query: 378 AHFNPE 395
            HFNPE
Sbjct: 63  PHFNPE 68



 Score = 30.7 bits (66), Expect = 0.30
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = +2

Query: 326 FHVHEFGDNTNXLHISWSSFQP 391
           FH+H+FGDNTN    +   F P
Sbjct: 46  FHIHQFGDNTNGCTSAGPHFNP 67


>SPAPYUG7.05 |||delta-1-pyrroline-5-carboxylate reductase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 282

 Score = 30.3 bits (65), Expect = 0.40
 Identities = 16/50 (32%), Positives = 26/50 (52%)
 Frame = +3

Query: 228 GDVSGTVFFDQQDEKSPVVVSGEVQGLTKGKHGSMCTNLVTTQTGCTSAG 377
           G V   + F Q  E +   + G  + + +G+H +M  N V+T  GCT +G
Sbjct: 204 GGVMMGIPFPQAQELAAQTMVGTGRMVLQGQHPAMIRNDVSTPAGCTISG 253


>SPCC320.08 |||membrane transporter |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 505

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 11/31 (35%), Positives = 20/31 (64%)
 Frame = -1

Query: 579 VPSHQGQHGQLSATNDAVRSMKRDXGILD*Y 487
           V SH+GQH   S+ N+ +++ +   GI++ Y
Sbjct: 10  VQSHEGQHDNSSSLNEEIQTSQDPLGIVESY 40


>SPAC19G12.14 |its3||1-phosphatidylinositol-4-phosphate 5-kinase
           Its3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 742

 Score = 27.1 bits (57), Expect = 3.7
 Identities = 15/46 (32%), Positives = 22/46 (47%)
 Frame = +3

Query: 258 QQDEKSPVVVSGEVQGLTKGKHGSMCTNLVTTQTGCTSAGAHFNPE 395
           Q+  K   V +G V+  T  KHGS+  N   +     S  AH +P+
Sbjct: 680 QRVNKQQSVNAGNVR--TNNKHGSLNNNTAPSSRNAKSTSAHKSPK 723


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,880,837
Number of Sequences: 5004
Number of extensions: 53597
Number of successful extensions: 121
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 119
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 466510270
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)