Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP06_F_M16
(918 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1599 - 28022196-28022218,28022355-28022408,28022545-280226... 54 1e-07
03_02_1006 + 13150394-13150450,13150787-13150899,13152538-131527... 53 3e-07
08_02_1596 + 28125331-28125556,28125986-28126047,28126160-281261... 51 1e-06
03_02_0185 - 6239421-6239480,6239971-6240024,6240523-6240578,624... 51 1e-06
04_04_0863 + 28847761-28848009,28848108-28848131,28849388-288494... 30 2.2
03_02_0800 + 11337206-11337532,11337634-11337957,11338060-113381... 29 5.2
02_04_0595 - 24186714-24186898,24187004-24187150,24187647-241877... 29 6.8
11_06_0234 + 21574380-21575197,21576131-21576190,21578320-215800... 28 9.0
>07_03_1599 -
28022196-28022218,28022355-28022408,28022545-28022620,
28022727-28022758,28022921-28023016,28023105-28023206,
28023291-28023366
Length = 152
Score = 54.4 bits (125), Expect = 1e-07
Identities = 30/64 (46%), Positives = 34/64 (53%), Gaps = 2/64 (3%)
Frame = +3
Query: 207 KAVCVLRGD--VSGTVFFDQQDEKSPVVVSGEVQGLTKGKHGSMCTNLVTTQTGCTSAGA 380
KAV VL V GT+FF Q+ + P V+G V GL G HG L T GC S G
Sbjct: 3 KAVAVLASSEGVKGTIFFSQEGD-GPTSVTGSVSGLKPGLHGFHVHALGDTTNGCMSTGP 61
Query: 381 HFNP 392
HFNP
Sbjct: 62 HFNP 65
Score = 46.8 bits (106), Expect = 2e-05
Identities = 24/48 (50%), Positives = 30/48 (62%)
Frame = +1
Query: 400 QDHGGPSSAVPHVGDLGNIEAIENXGVXKVSIQDSXISLHGPNSIIGR 543
++HG P H GDLGNI A + GV V++ DS I L G +SIIGR
Sbjct: 68 KEHGAPQDENRHAGDLGNITAGAD-GVANVNVSDSQIPLTGAHSIIGR 114
Score = 31.9 bits (69), Expect = 0.73
Identities = 12/17 (70%), Positives = 15/17 (88%)
Frame = +3
Query: 546 LIVHADPDDWGLGGNEL 596
++VHADPDD G GG+EL
Sbjct: 116 VVVHADPDDLGKGGHEL 132
>03_02_1006 +
13150394-13150450,13150787-13150899,13152538-13152709,
13153791-13153878,13153971-13154072,13154197-13154292,
13154547-13154578,13154727-13154802,13155264-13155317,
13155431-13155453
Length = 270
Score = 53.2 bits (122), Expect = 3e-07
Identities = 25/48 (52%), Positives = 31/48 (64%)
Frame = +1
Query: 400 QDHGGPSSAVPHVGDLGNIEAIENXGVXKVSIQDSXISLHGPNSIIGR 543
++HG P H GDLGN+ A E+ GV + + DS I L GPNSIIGR
Sbjct: 186 KEHGAPEDETRHAGDLGNVTAGED-GVANIHVVDSQIPLTGPNSIIGR 232
Score = 49.6 bits (113), Expect = 3e-06
Identities = 30/69 (43%), Positives = 36/69 (52%), Gaps = 2/69 (2%)
Frame = +3
Query: 192 ITMPAKAVCVLRGD--VSGTVFFDQQDEKSPVVVSGEVQGLTKGKHGSMCTNLVTTQTGC 365
+TM KAV VL V GT+ F Q+ + P V+G V GL G HG L T GC
Sbjct: 117 LTM-VKAVVVLGSSEIVKGTIHFVQEGD-GPTTVTGSVSGLKPGLHGFHIHALGDTTNGC 174
Query: 366 TSAGAHFNP 392
S G H+NP
Sbjct: 175 MSTGPHYNP 183
Score = 31.9 bits (69), Expect = 0.73
Identities = 12/17 (70%), Positives = 15/17 (88%)
Frame = +3
Query: 546 LIVHADPDDWGLGGNEL 596
++VHADPDD G GG+EL
Sbjct: 234 VVVHADPDDLGKGGHEL 250
>08_02_1596 +
28125331-28125556,28125986-28126047,28126160-28126199,
28126934-28127029,28127138-28127169,28127274-28127349,
28127430-28127483,28127916-28127941
Length = 203
Score = 51.2 bits (117), Expect = 1e-06
Identities = 29/64 (45%), Positives = 33/64 (51%), Gaps = 2/64 (3%)
Frame = +3
Query: 207 KAVCVLRG--DVSGTVFFDQQDEKSPVVVSGEVQGLTKGKHGSMCTNLVTTQTGCTSAGA 380
KAV VL+G V G V Q D++ P V+ V GLT G HG T GC S G
Sbjct: 53 KAVAVLKGTSQVEGVVTLTQ-DDQGPTTVNVRVTGLTPGLHGFHLHEFGDTTNGCISTGP 111
Query: 381 HFNP 392
HFNP
Sbjct: 112 HFNP 115
Score = 50.0 bits (114), Expect = 3e-06
Identities = 24/46 (52%), Positives = 28/46 (60%)
Frame = +1
Query: 406 HGGPSSAVPHVGDLGNIEAIENXGVXKVSIQDSXISLHGPNSIIGR 543
HG P V H GDLGNI A GV + +I D I L GPNS++GR
Sbjct: 120 HGAPEDEVRHAGDLGNIVA-NAEGVAEATIVDKQIPLSGPNSVVGR 164
>03_02_0185 -
6239421-6239480,6239971-6240024,6240523-6240578,
6241108-6241183,6241276-6241307,6241421-6241516,
6242498-6242599,6242728-6242833
Length = 193
Score = 51.2 bits (117), Expect = 1e-06
Identities = 26/48 (54%), Positives = 31/48 (64%)
Frame = +1
Query: 400 QDHGGPSSAVPHVGDLGNIEAIENXGVXKVSIQDSXISLHGPNSIIGR 543
+ HG PS HVGDLGNI A GV + I+D ISL GP+SI+GR
Sbjct: 78 KSHGAPSDDERHVGDLGNIVA-NKDGVADIFIKDLQISLSGPHSILGR 124
Score = 42.7 bits (96), Expect = 4e-04
Identities = 21/53 (39%), Positives = 24/53 (45%)
Frame = +3
Query: 234 VSGTVFFDQQDEKSPVVVSGEVQGLTKGKHGSMCTNLVTTQTGCTSAGAHFNP 392
V+G + F Q V G V GL G HG + T GC S G HFNP
Sbjct: 23 VAGALHFFQDPSTGYTEVRGRVTGLAPGLHGFHIHSFGDTTNGCNSTGPHFNP 75
>04_04_0863 +
28847761-28848009,28848108-28848131,28849388-28849460,
28849550-28849684,28850191-28850411,28851747-28851983
Length = 312
Score = 30.3 bits (65), Expect = 2.2
Identities = 21/73 (28%), Positives = 27/73 (36%)
Frame = +3
Query: 189 NITMPAKAVCVLRGDVSGTVFFDQQDEKSPVVVSGEVQGLTKGKHGSMCTNLVTTQTGCT 368
N + + AV +G V V Q +V GL+ GKHG G
Sbjct: 160 NDFLVSAAVAEFKGPVIFGVVRLAQVNMELAIVEATFSGLSPGKHGWSINEFGDLTRGAE 219
Query: 369 SAGAHFNPEKTRS 407
S G +NP RS
Sbjct: 220 STGKVYNPSDYRS 232
>03_02_0800 +
11337206-11337532,11337634-11337957,11338060-11338194,
11338280-11338519
Length = 341
Score = 29.1 bits (62), Expect = 5.2
Identities = 14/35 (40%), Positives = 17/35 (48%), Gaps = 2/35 (5%)
Frame = -2
Query: 479 TPXFSIA--SMLPRSPTWGTAELGPP*SCFFRVEM 381
TP + I P W TAELGPP + +F M
Sbjct: 155 TPQYQIGYCQQCPDKVAWPTAELGPPPALYFNAGM 189
>02_04_0595 -
24186714-24186898,24187004-24187150,24187647-24187718,
24188061-24188204,24188769-24188840,24189233-24189304,
24189805-24189876,24190214-24190285,24190416-24190487,
24190685-24190756,24190957-24191031,24191226-24191372,
24191670-24191877,24192240-24192368,24192454-24192663
Length = 582
Score = 28.7 bits (61), Expect = 6.8
Identities = 23/75 (30%), Positives = 38/75 (50%), Gaps = 7/75 (9%)
Frame = +1
Query: 373 LELISTLKKQDHGGPSSAVPHVGDLGNIEAIE-------NXGVXKVSIQDSXISLHGPNS 531
L L+ +L+ D SS + H+ L N+E+I + G+ K+S +S S++ N
Sbjct: 378 LMLLKSLELSDTEVGSSGLQHLSGLRNLESINLSFTLVTDTGMKKISALNSLKSVNLDNR 437
Query: 532 IIGRT*LSMLTLMTG 576
I L+ LT +TG
Sbjct: 438 QITDVGLAALTSLTG 452
>11_06_0234 +
21574380-21575197,21576131-21576190,21578320-21580053,
21581859-21582006
Length = 919
Score = 28.3 bits (60), Expect = 9.0
Identities = 11/27 (40%), Positives = 12/27 (44%)
Frame = -2
Query: 512 EXWESWIDTLXTPXFSIASMLPRSPTW 432
E WE W F + LPR PTW
Sbjct: 750 EGWEGWEPPRQFRKFYVDGSLPRRPTW 776
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,532,035
Number of Sequences: 37544
Number of extensions: 377880
Number of successful extensions: 759
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 736
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 752
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2612387020
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -