Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP06_F_M16
(918 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X77020-1|CAA54318.1| 158|Caenorhabditis elegans copper/zinc sup... 63 2e-10
L20135-1|AAA28147.1| 158|Caenorhabditis elegans superoxide dism... 63 2e-10
AC006608-8|AAV34795.1| 158|Caenorhabditis elegans Sod (superoxi... 63 2e-10
AC006608-7|AAF39759.1| 180|Caenorhabditis elegans Sod (superoxi... 63 2e-10
U42833-3|AAA83577.1| 178|Caenorhabditis elegans Sod (superoxide... 56 3e-08
Z27080-4|CAB61015.1| 176|Caenorhabditis elegans Hypothetical pr... 47 2e-05
AB190513-1|BAD51397.1| 221|Caenorhabditis elegans superoxide di... 47 2e-05
AB003924-1|BAA28262.1| 176|Caenorhabditis elegans SOD4-1 protein. 47 2e-05
>X77020-1|CAA54318.1| 158|Caenorhabditis elegans copper/zinc
superoxide dismutase protein.
Length = 158
Score = 63.3 bits (147), Expect = 2e-10
Identities = 30/66 (45%), Positives = 40/66 (60%), Gaps = 1/66 (1%)
Frame = +3
Query: 198 MPAKAVCVLRGD-VSGTVFFDQQDEKSPVVVSGEVQGLTKGKHGSMCTNLVTTQTGCTSA 374
M +AV VLRG+ V+GT++ Q+ E V+ GE++GLT G HG + GC SA
Sbjct: 1 MSNRAVAVLRGETVTGTIWITQKSENDQAVIEGEIKGLTPGLHGFHVHQYGDSTNGCISA 60
Query: 375 GAHFNP 392
G HFNP
Sbjct: 61 GPHFNP 66
Score = 60.5 bits (140), Expect = 2e-09
Identities = 24/47 (51%), Positives = 37/47 (78%)
Frame = +1
Query: 406 HGGPSSAVPHVGDLGNIEAIENXGVXKVSIQDSXISLHGPNSIIGRT 546
HGGP S + HVGDLGN+EA + GV K+ + D+ ++L+GPN+++GR+
Sbjct: 71 HGGPKSEIRHVGDLGNVEAGAD-GVAKIKLTDTLVTLYGPNTVVGRS 116
>L20135-1|AAA28147.1| 158|Caenorhabditis elegans superoxide
dismutase protein.
Length = 158
Score = 63.3 bits (147), Expect = 2e-10
Identities = 30/66 (45%), Positives = 40/66 (60%), Gaps = 1/66 (1%)
Frame = +3
Query: 198 MPAKAVCVLRGD-VSGTVFFDQQDEKSPVVVSGEVQGLTKGKHGSMCTNLVTTQTGCTSA 374
M +AV VLRG+ V+GT++ Q+ E V+ GE++GLT G HG + GC SA
Sbjct: 1 MSNRAVAVLRGETVTGTIWITQKSENDQAVIEGEIKGLTPGLHGFHVHQYGDSTNGCISA 60
Query: 375 GAHFNP 392
G HFNP
Sbjct: 61 GPHFNP 66
Score = 60.5 bits (140), Expect = 2e-09
Identities = 24/47 (51%), Positives = 37/47 (78%)
Frame = +1
Query: 406 HGGPSSAVPHVGDLGNIEAIENXGVXKVSIQDSXISLHGPNSIIGRT 546
HGGP S + HVGDLGN+EA + GV K+ + D+ ++L+GPN+++GR+
Sbjct: 71 HGGPKSEIRHVGDLGNVEAGAD-GVAKIKLTDTLVTLYGPNTVVGRS 116
>AC006608-8|AAV34795.1| 158|Caenorhabditis elegans Sod (superoxide
dismutase) protein1, isoform b protein.
Length = 158
Score = 63.3 bits (147), Expect = 2e-10
Identities = 30/66 (45%), Positives = 40/66 (60%), Gaps = 1/66 (1%)
Frame = +3
Query: 198 MPAKAVCVLRGD-VSGTVFFDQQDEKSPVVVSGEVQGLTKGKHGSMCTNLVTTQTGCTSA 374
M +AV VLRG+ V+GT++ Q+ E V+ GE++GLT G HG + GC SA
Sbjct: 1 MSNRAVAVLRGETVTGTIWITQKSENDQAVIEGEIKGLTPGLHGFHVHQYGDSTNGCISA 60
Query: 375 GAHFNP 392
G HFNP
Sbjct: 61 GPHFNP 66
Score = 60.5 bits (140), Expect = 2e-09
Identities = 24/47 (51%), Positives = 37/47 (78%)
Frame = +1
Query: 406 HGGPSSAVPHVGDLGNIEAIENXGVXKVSIQDSXISLHGPNSIIGRT 546
HGGP S + HVGDLGN+EA + GV K+ + D+ ++L+GPN+++GR+
Sbjct: 71 HGGPKSEIRHVGDLGNVEAGAD-GVAKIKLTDTLVTLYGPNTVVGRS 116
>AC006608-7|AAF39759.1| 180|Caenorhabditis elegans Sod (superoxide
dismutase) protein1, isoform a protein.
Length = 180
Score = 63.3 bits (147), Expect = 2e-10
Identities = 30/66 (45%), Positives = 40/66 (60%), Gaps = 1/66 (1%)
Frame = +3
Query: 198 MPAKAVCVLRGD-VSGTVFFDQQDEKSPVVVSGEVQGLTKGKHGSMCTNLVTTQTGCTSA 374
M +AV VLRG+ V+GT++ Q+ E V+ GE++GLT G HG + GC SA
Sbjct: 23 MSNRAVAVLRGETVTGTIWITQKSENDQAVIEGEIKGLTPGLHGFHVHQYGDSTNGCISA 82
Query: 375 GAHFNP 392
G HFNP
Sbjct: 83 GPHFNP 88
Score = 60.5 bits (140), Expect = 2e-09
Identities = 24/47 (51%), Positives = 37/47 (78%)
Frame = +1
Query: 406 HGGPSSAVPHVGDLGNIEAIENXGVXKVSIQDSXISLHGPNSIIGRT 546
HGGP S + HVGDLGN+EA + GV K+ + D+ ++L+GPN+++GR+
Sbjct: 93 HGGPKSEIRHVGDLGNVEAGAD-GVAKIKLTDTLVTLYGPNTVVGRS 138
>U42833-3|AAA83577.1| 178|Caenorhabditis elegans Sod (superoxide
dismutase) protein5 protein.
Length = 178
Score = 56.4 bits (130), Expect = 3e-08
Identities = 26/50 (52%), Positives = 34/50 (68%)
Frame = +1
Query: 397 KQDHGGPSSAVPHVGDLGNIEAIENXGVXKVSIQDSXISLHGPNSIIGRT 546
K +HGG S V HVGDLGN+EA + GV K+ D +SL G N++IGR+
Sbjct: 88 KMNHGGRDSVVRHVGDLGNVEAGAD-GVAKIKFSDKVVSLFGANTVIGRS 136
Score = 55.6 bits (128), Expect = 5e-08
Identities = 30/65 (46%), Positives = 37/65 (56%), Gaps = 1/65 (1%)
Frame = +3
Query: 207 KAVCVLRGD-VSGTVFFDQQDEKSPVVVSGEVQGLTKGKHGSMCTNLVTTQTGCTSAGAH 383
+AV VLRG V GTV+ Q+ E GE++GL+ G HG + GCTSAG H
Sbjct: 24 RAVAVLRGTAVFGTVWLTQKAEGEETEFEGEIKGLSPGLHGFHIHQYGDSTDGCTSAGPH 83
Query: 384 FNPEK 398
FNP K
Sbjct: 84 FNPCK 88
>Z27080-4|CAB61015.1| 176|Caenorhabditis elegans Hypothetical
protein F55H2.1 protein.
Length = 176
Score = 47.2 bits (107), Expect = 2e-05
Identities = 24/56 (42%), Positives = 31/56 (55%)
Frame = +3
Query: 231 DVSGTVFFDQQDEKSPVVVSGEVQGLTKGKHGSMCTNLVTTQTGCTSAGAHFNPEK 398
++ GT+ FDQ S + ++G V GL GKHG T GC SAG H+NP K
Sbjct: 39 ELIGTIDFDQSG--SFLKLNGSVSGLAAGKHGFHIHEKGDTGNGCLSAGGHYNPHK 92
Score = 47.2 bits (107), Expect = 2e-05
Identities = 24/50 (48%), Positives = 31/50 (62%)
Frame = +1
Query: 397 KQDHGGPSSAVPHVGDLGNIEAIENXGVXKVSIQDSXISLHGPNSIIGRT 546
K HG P + H+GDLGNIE+ + G +S+ DS SL G SIIGR+
Sbjct: 92 KLSHGAPDDSNRHIGDLGNIESPAS-GDTLISVSDSLASLSGQYSIIGRS 140
>AB190513-1|BAD51397.1| 221|Caenorhabditis elegans superoxide
dismutase protein.
Length = 221
Score = 47.2 bits (107), Expect = 2e-05
Identities = 24/56 (42%), Positives = 31/56 (55%)
Frame = +3
Query: 231 DVSGTVFFDQQDEKSPVVVSGEVQGLTKGKHGSMCTNLVTTQTGCTSAGAHFNPEK 398
++ GT+ FDQ S + ++G V GL GKHG T GC SAG H+NP K
Sbjct: 39 ELIGTIDFDQSG--SFLKLNGSVSGLAAGKHGFHIHEKGDTGNGCLSAGGHYNPHK 92
Score = 47.2 bits (107), Expect = 2e-05
Identities = 24/50 (48%), Positives = 31/50 (62%)
Frame = +1
Query: 397 KQDHGGPSSAVPHVGDLGNIEAIENXGVXKVSIQDSXISLHGPNSIIGRT 546
K HG P + H+GDLGNIE+ + G +S+ DS SL G SIIGR+
Sbjct: 92 KLSHGAPDDSNRHIGDLGNIESPAS-GDTLISVSDSLASLSGQYSIIGRS 140
>AB003924-1|BAA28262.1| 176|Caenorhabditis elegans SOD4-1 protein.
Length = 176
Score = 47.2 bits (107), Expect = 2e-05
Identities = 24/56 (42%), Positives = 31/56 (55%)
Frame = +3
Query: 231 DVSGTVFFDQQDEKSPVVVSGEVQGLTKGKHGSMCTNLVTTQTGCTSAGAHFNPEK 398
++ GT+ FDQ S + ++G V GL GKHG T GC SAG H+NP K
Sbjct: 39 ELIGTIDFDQSG--SFLKLNGSVSGLAAGKHGFHIHEKGDTGNGCLSAGGHYNPHK 92
Score = 47.2 bits (107), Expect = 2e-05
Identities = 24/50 (48%), Positives = 31/50 (62%)
Frame = +1
Query: 397 KQDHGGPSSAVPHVGDLGNIEAIENXGVXKVSIQDSXISLHGPNSIIGRT 546
K HG P + H+GDLGNIE+ + G +S+ DS SL G SIIGR+
Sbjct: 92 KLSHGAPDDSNRHIGDLGNIESPAS-GDTLISVSDSLASLSGQYSIIGRS 140
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,300,221
Number of Sequences: 27780
Number of extensions: 316917
Number of successful extensions: 725
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 658
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 710
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2349764032
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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