Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP06_F_M13
(901 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC22F3.05c |alp41||ADP-ribosylation factor Alp41|Schizosacchar... 145 9e-36
SPBC1539.08 |||ADP-ribosylation factor, Arf family|Schizosacchar... 109 4e-25
SPBC4F6.18c |arf1||ADP-ribosylation factor Arf1|Schizosaccharomy... 101 1e-22
SPBC31F10.06c |sar1||ADP-ribosylation factor Sar1|Schizosaccharo... 67 4e-12
SPAC4C5.02c |ryh1|hos1|GTPase Ryh1|Schizosaccharomyces pombe|chr... 42 9e-05
SPBC1703.10 |ypt1||GTPase Ypt1|Schizosaccharomyces pombe|chr 2||... 42 2e-04
SPAC1B3.11c |ypt4||GTPase Ypt4|Schizosaccharomyces pombe|chr 1||... 41 3e-04
SPAC9E9.07c |ypt2||GTPase Ypt2 |Schizosaccharomyces pombe|chr 1|... 41 3e-04
SPBC1289.03c |spi1||Ran GTPase Spi1|Schizosaccharomyces pombe|ch... 36 0.010
SPAC18G6.03 |ypt3||GTPase Ypt3|Schizosaccharomyces pombe|chr 1||... 35 0.014
SPAC6F6.15 |ypt5||GTPase Ypt5|Schizosaccharomyces pombe|chr 1|||... 34 0.024
SPBC405.04c |ypt7||GTPase Ypt7|Schizosaccharomyces pombe|chr 2||... 32 0.097
SPAC1565.06c |spg1|sid3|GTPase Spg1|Schizosaccharomyces pombe|ch... 32 0.097
SPAPB1A10.10c |ypt71||GTPase Ypt71|Schizosaccharomyces pombe|chr... 31 0.17
SPCC825.01 |||ribosome biogenesis ATPase, Arb family |Schizosacc... 29 1.2
SPAC6F12.08c |||exocyst complex subunit Exo84|Schizosaccharomyce... 29 1.2
SPBC24C6.06 |gpa1||G-protein alpha subunit |Schizosaccharomyces ... 27 3.6
SPBC337.13c |gtr1||Gtr1/RagA G protein Gtr1|Schizosaccharomyces ... 27 3.6
SPAC23H3.13c |gpa2|git8|heterotrimeric G protein alpha-2 subunit... 27 4.8
SPAC222.05c |mss1||COX RNA-associated protein|Schizosaccharomyce... 27 4.8
>SPAC22F3.05c |alp41||ADP-ribosylation factor
Alp41|Schizosaccharomyces pombe|chr 1|||Manual
Length = 186
Score = 145 bits (351), Expect = 9e-36
Identities = 69/153 (45%), Positives = 92/153 (60%)
Frame = +3
Query: 174 MGFLTILKKLRQKEKEMRILMLGLDNAGKTTILKRFNGEPIDTISPTLGFNIKTLEHKGF 353
MG LTIL++ + KE+E+R+L+LGLDNAGKTTILK E ++ +SPT GF I+TLE +G
Sbjct: 1 MGLLTILRQQKLKEREVRVLLLGLDNAGKTTILKCLLNEDVNEVSPTFGFQIRTLEVEGL 60
Query: 354 KLNIWDVGGQKSLRSYWKNYFESTXXXXXXXXXXXXXRLSACXXXXXXXXXXXXXXXXXX 533
+ IWD+GGQK+LR++WKNYFEST RL C
Sbjct: 61 RFTIWDIGGQKTLRNFWKNYFESTEAIIWVVDSLDDLRLEECRNTLQELLVEEKLLFTSI 120
Query: 534 XXXXNKCDLPGALSLQQIREALDLDSIKSHHWR 632
NK D+ GALS ++I + L++ KS HWR
Sbjct: 121 LVLANKSDVSGALSSEEISKILNISKYKSSHWR 153
>SPBC1539.08 |||ADP-ribosylation factor, Arf
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 184
Score = 109 bits (263), Expect = 4e-25
Identities = 61/147 (41%), Positives = 76/147 (51%), Gaps = 2/147 (1%)
Frame = +3
Query: 216 KEMRILMLGLDNAGKTTILKRFN-GEPIDTISPTLGFNIKTLEHKGFKLNIWDVGGQKSL 392
KEMRILMLGLD AGKTTIL + + + TI PT+GFN++T+ +K K N+WDVGGQ +
Sbjct: 20 KEMRILMLGLDAAGKTTILYKLKLNQSVVTI-PTVGFNVETVTYKNIKFNVWDVGGQDKI 78
Query: 393 RSYWKNYFESTXXXXXXXXXXXXXRLSACXXXXXXXXXXXXXXXXXXXXXXNKCDLPGAL 572
R W++YF T R+S NK DLPGAL
Sbjct: 79 RPLWRHYFTGTKGLIFVVDSADSNRISEARQELHRIISDREMRDCLLLVLANKQDLPGAL 138
Query: 573 SLQQIREALDLDSIKSHHWRXS-XCAL 650
S QI + L LD +K W CAL
Sbjct: 139 SPAQITDVLQLDKLKDRLWNVQPTCAL 165
>SPBC4F6.18c |arf1||ADP-ribosylation factor Arf1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 180
Score = 101 bits (242), Expect = 1e-22
Identities = 51/140 (36%), Positives = 75/140 (53%), Gaps = 1/140 (0%)
Frame = +3
Query: 213 EKEMRILMLGLDNAGKTTILKRFN-GEPIDTISPTLGFNIKTLEHKGFKLNIWDVGGQKS 389
++EMRILM+GLD AGKTTIL + GE + TI PT+GFN++T+E++ +WDVGGQ
Sbjct: 15 KREMRILMVGLDAAGKTTILYKLKLGEIVTTI-PTIGFNVETVEYRNISFTVWDVGGQDK 73
Query: 390 LRSYWKNYFESTXXXXXXXXXXXXXRLSACXXXXXXXXXXXXXXXXXXXXXXNKCDLPGA 569
+R W++YF++T R+S NK DLP A
Sbjct: 74 IRPLWRHYFQNTQGIIFVVDSNDRERISEAHEELQRMLNEDELRDALLLVFANKQDLPNA 133
Query: 570 LSLQQIREALDLDSIKSHHW 629
++ +I + L L S++ W
Sbjct: 134 MNAAEITDKLGLHSLRHRQW 153
>SPBC31F10.06c |sar1||ADP-ribosylation factor
Sar1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 190
Score = 66.9 bits (156), Expect = 4e-12
Identities = 42/146 (28%), Positives = 59/146 (40%)
Frame = +3
Query: 168 IIMGFLTILKKLRQKEKEMRILMLGLDNAGKTTILKRFNGEPIDTISPTLGFNIKTLEHK 347
II F L L K ++L LGLDNAGKTT+L + + + PTL + L
Sbjct: 3 IINWFYDALAMLGLVNKHAKMLFLGLDNAGKTTLLHMLKNDRLAVMQPTLHPTSEELAIG 62
Query: 348 GFKLNIWDVGGQKSLRSYWKNYFESTXXXXXXXXXXXXXRLSACXXXXXXXXXXXXXXXX 527
+ +D+GG + R W++YF RLS
Sbjct: 63 NVRFTTFDLGGHQQARRLWRDYFPEVNGIVYLVDCCDFERLSESKAELDALLAMEELARV 122
Query: 528 XXXXXXNKCDLPGALSLQQIREALDL 605
NK D PGA+S +++ AL L
Sbjct: 123 PFLILGNKIDAPGAISEDELKAALGL 148
>SPAC4C5.02c |ryh1|hos1|GTPase Ryh1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 201
Score = 42.3 bits (95), Expect = 9e-05
Identities = 23/75 (30%), Positives = 41/75 (54%), Gaps = 5/75 (6%)
Frame = +3
Query: 216 KEMRILMLGLDNAGKTTILKRFNGEPID-TISPTLGFNI--KT--LEHKGFKLNIWDVGG 380
++ +++ LG + GKT+++ RF + D T T+G + KT LE + +L +WD G
Sbjct: 10 RKFKLVFLGEQSVGKTSLITRFMYDQFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAG 69
Query: 381 QKSLRSYWKNYFEST 425
Q+ RS +Y +
Sbjct: 70 QERFRSLIPSYIRDS 84
>SPBC1703.10 |ypt1||GTPase Ypt1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 203
Score = 41.5 bits (93), Expect = 2e-04
Identities = 24/69 (34%), Positives = 39/69 (56%), Gaps = 5/69 (7%)
Frame = +3
Query: 225 RILMLGLDNAGKTTILKRFNGEPI-DTISPTLG--FNIKT--LEHKGFKLNIWDVGGQKS 389
++L++G GK+ +L RF + ++ T+G F I+T LE K KL IWD GQ+
Sbjct: 10 KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTFELEGKTVKLQIWDTAGQER 69
Query: 390 LRSYWKNYF 416
R+ +Y+
Sbjct: 70 FRTITSSYY 78
>SPAC1B3.11c |ypt4||GTPase Ypt4|Schizosaccharomyces pombe|chr
1|||Manual
Length = 234
Score = 40.7 bits (91), Expect = 3e-04
Identities = 23/74 (31%), Positives = 39/74 (52%), Gaps = 9/74 (12%)
Frame = +3
Query: 222 MRILMLGLDNAGKTTILKRF-NGEPIDTISPTLGFNIKTL--------EHKGFKLNIWDV 374
++I++ G GK+ +L+RF + D +S T+G + + + K KL IWD
Sbjct: 10 VKIVLAGPSGTGKSCLLQRFVKNQWDDQVSHTVGIDFASRIISVGMGNQQKRIKLQIWDT 69
Query: 375 GGQKSLRSYWKNYF 416
GQ+ RS +NY+
Sbjct: 70 AGQEKFRSVARNYY 83
>SPAC9E9.07c |ypt2||GTPase Ypt2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 200
Score = 40.7 bits (91), Expect = 3e-04
Identities = 23/70 (32%), Positives = 39/70 (55%), Gaps = 5/70 (7%)
Frame = +3
Query: 222 MRILMLGLDNAGKTTILKRFNGEPID-TISPTLG--FNIKTLEHKG--FKLNIWDVGGQK 386
+++L++G GK+ +L RF+ + + T+G F I+T+E G KL IWD GQ+
Sbjct: 10 IKLLLIGDSGVGKSCLLLRFSEDSFTPSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE 69
Query: 387 SLRSYWKNYF 416
R+ Y+
Sbjct: 70 RFRTITTAYY 79
>SPBC1289.03c |spi1||Ran GTPase Spi1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 216
Score = 35.5 bits (78), Expect = 0.010
Identities = 23/75 (30%), Positives = 33/75 (44%), Gaps = 5/75 (6%)
Frame = +3
Query: 207 QKEKEMRILMLGLDNAGKTTILKR-FNGEPIDTISPTLGFNIKTLE-HKGFK---LNIWD 371
Q +++++G GKTT +KR GE TLG + L H F N+WD
Sbjct: 5 QNVPTFKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATLGVEVHPLHFHTNFGEICFNVWD 64
Query: 372 VGGQKSLRSYWKNYF 416
GQ+ L Y+
Sbjct: 65 TAGQEKLGGLRDGYY 79
>SPAC18G6.03 |ypt3||GTPase Ypt3|Schizosaccharomyces pombe|chr
1|||Manual
Length = 214
Score = 35.1 bits (77), Expect = 0.014
Identities = 20/69 (28%), Positives = 33/69 (47%), Gaps = 5/69 (7%)
Frame = +3
Query: 225 RILMLGLDNAGKTTILKRFNGEPIDTISP-TLGFNIKT----LEHKGFKLNIWDVGGQKS 389
+ +++G GK+ +L RF + S T+G T L++K K IWD GQ+
Sbjct: 12 KTVLIGDSGVGKSNLLMRFTRNEFNIESKSTIGVEFATRNIVLDNKKIKAQIWDTAGQER 71
Query: 390 LRSYWKNYF 416
R+ Y+
Sbjct: 72 YRAITSAYY 80
>SPAC6F6.15 |ypt5||GTPase Ypt5|Schizosaccharomyces pombe|chr
1|||Manual
Length = 211
Score = 34.3 bits (75), Expect = 0.024
Identities = 22/72 (30%), Positives = 38/72 (52%), Gaps = 6/72 (8%)
Frame = +3
Query: 225 RILMLGLDNAGKTTILKRFNGEPIDTI-SPTLG--FNIKTL---EHKGFKLNIWDVGGQK 386
++++LG GK++++ RF + D T+G F +TL E+ KL IWD GQ+
Sbjct: 16 KLVLLGDSAVGKSSLVLRFVKDQFDDYRESTIGAAFLTQTLPIDENTSVKLEIWDTAGQE 75
Query: 387 SLRSYWKNYFES 422
+S Y+ +
Sbjct: 76 RYKSLAPMYYRN 87
>SPBC405.04c |ypt7||GTPase Ypt7|Schizosaccharomyces pombe|chr
2|||Manual
Length = 205
Score = 32.3 bits (70), Expect = 0.097
Identities = 19/69 (27%), Positives = 36/69 (52%), Gaps = 5/69 (7%)
Frame = +3
Query: 207 QKEKEMRILMLGLDNAGKTTILKRF-NGEPIDTISPTLGFNIKTLE----HKGFKLNIWD 371
+K+ +++++LG GKT+I+ ++ N + T+G + T E K L +WD
Sbjct: 4 KKKHLLKVIILGESGVGKTSIMNQYVNRKFSKDYKATIGADFLTKEVLVDDKVVTLQLWD 63
Query: 372 VGGQKSLRS 398
GQ+ +S
Sbjct: 64 TAGQERFQS 72
>SPAC1565.06c |spg1|sid3|GTPase Spg1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 198
Score = 32.3 bits (70), Expect = 0.097
Identities = 19/66 (28%), Positives = 38/66 (57%), Gaps = 5/66 (7%)
Frame = +3
Query: 204 RQKEKEMRILMLGLDNAGKTTILKRF-NGEPIDTISPTLGFNI--KTLEHKGFKL--NIW 368
R+ +++ M+G + GKT+++ + G + + TLG N KT+ + ++ +IW
Sbjct: 5 RKNNVTIKVGMIGDSSIGKTSLMVTYVQGSFDEESTQTLGVNFMEKTISIRNTEITFSIW 64
Query: 369 DVGGQK 386
D+GGQ+
Sbjct: 65 DLGGQR 70
>SPAPB1A10.10c |ypt71||GTPase Ypt71|Schizosaccharomyces pombe|chr
1|||Manual
Length = 208
Score = 31.5 bits (68), Expect = 0.17
Identities = 18/69 (26%), Positives = 34/69 (49%), Gaps = 5/69 (7%)
Frame = +3
Query: 207 QKEKEMRILMLGLDNAGKTTILKRFNGEPIDT-ISPTLGFNIKT----LEHKGFKLNIWD 371
QK +++++LG GKT ++ +F + T+G + T ++ K L +WD
Sbjct: 4 QKRVFLKVVILGDSGVGKTCLMNQFVNQKFSREYKATIGADFLTKDVVVDDKLVTLQLWD 63
Query: 372 VGGQKSLRS 398
GQ+ +S
Sbjct: 64 TAGQERFQS 72
>SPCC825.01 |||ribosome biogenesis ATPase, Arb family
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 822
Score = 28.7 bits (61), Expect = 1.2
Identities = 20/73 (27%), Positives = 39/73 (53%), Gaps = 3/73 (4%)
Frame = +3
Query: 186 TILKKLR-QKEKEMRILMLGLDNAGKTTILKRFNGEPIDTISPTLGFNIKTLEHKGFKLN 362
TI KL + + R+ ++G + AGKTT++K ++ + P+ G + H G +L
Sbjct: 608 TIFSKLNFGLDLKSRVALVGPNGAGKTTLIKLI----LEKVQPSTG---SVVRHHGLRLA 660
Query: 363 IWD--VGGQKSLR 395
+++ +G Q +R
Sbjct: 661 LFNQHMGDQLDMR 673
>SPAC6F12.08c |||exocyst complex subunit Exo84|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 578
Score = 28.7 bits (61), Expect = 1.2
Identities = 13/34 (38%), Positives = 21/34 (61%)
Frame = +3
Query: 198 KLRQKEKEMRILMLGLDNAGKTTILKRFNGEPID 299
++ QKEKE+ + L +++ KTT+L N E D
Sbjct: 258 EMLQKEKEVSLYKLSINHNNKTTLLAVHNSEERD 291
>SPBC24C6.06 |gpa1||G-protein alpha subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 407
Score = 27.1 bits (57), Expect = 3.6
Identities = 9/20 (45%), Positives = 18/20 (90%)
Frame = +3
Query: 219 EMRILMLGLDNAGKTTILKR 278
++++L+LG ++GKTTI+K+
Sbjct: 74 DIKVLLLGAGDSGKTTIMKQ 93
Score = 26.2 bits (55), Expect = 6.3
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = +3
Query: 312 TLGFNIKTLEHKGFKLNIWDVGGQKSLRSYWKNYFES 422
T G + +T +DVGGQ+S R W + FE+
Sbjct: 221 TTGISEETFLLNRHHYRFFDVGGQRSERRKWIHCFEN 257
>SPBC337.13c |gtr1||Gtr1/RagA G protein Gtr1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 308
Score = 27.1 bits (57), Expect = 3.6
Identities = 18/72 (25%), Positives = 36/72 (50%), Gaps = 6/72 (8%)
Frame = +3
Query: 225 RILMLGLDNAGKTTILKRFNGEPIDTISPTLGFNIKTLEHKGFK------LNIWDVGGQK 386
++L++G +GK+++ + + LG I +EH + LN+WD GGQ+
Sbjct: 4 KVLLMGRSGSGKSSMRSIVFSNYVAKDTRRLGATID-IEHSHVRFLGNLVLNLWDCGGQE 62
Query: 387 SLRSYWKNYFES 422
++ +NY +
Sbjct: 63 ---AFMENYLSA 71
>SPAC23H3.13c |gpa2|git8|heterotrimeric G protein alpha-2 subunit
Gpa2 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 354
Score = 26.6 bits (56), Expect = 4.8
Identities = 12/30 (40%), Positives = 20/30 (66%)
Frame = +3
Query: 333 TLEHKGFKLNIWDVGGQKSLRSYWKNYFES 422
TL+H ++ ++DVGGQ++ R W FE+
Sbjct: 188 TLDH--LQIRMFDVGGQRTERRKWIYCFEN 215
>SPAC222.05c |mss1||COX RNA-associated protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 496
Score = 26.6 bits (56), Expect = 4.8
Identities = 12/42 (28%), Positives = 21/42 (50%)
Frame = +3
Query: 216 KEMRILMLGLDNAGKTTILKRFNGEPIDTISPTLGFNIKTLE 341
K + + +LG NAGK++++ I +SP G +E
Sbjct: 238 KGINVAILGPSNAGKSSLINLLANRRISIVSPQSGTTRDAIE 279
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,796,912
Number of Sequences: 5004
Number of extensions: 46630
Number of successful extensions: 126
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 121
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 454497130
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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