Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP06_F_M13
         (901 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein p...    25   0.94 
AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter...    24   2.2  
AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cycl...    22   8.8  
AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cycl...    22   8.8  

>DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein
           protein.
          Length = 430

 Score = 25.0 bits (52), Expect = 0.94
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = +3

Query: 312 TLGFNIKTLEHKGFKLNIWDVGGQKSLRSY 401
           T+G    T++   + LNI+D+   K LR Y
Sbjct: 148 TIGIGNTTIQACPYTLNIFDLTSDKLLRQY 177


>AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter
           Am-EAAT protein.
          Length = 543

 Score = 23.8 bits (49), Expect = 2.2
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +2

Query: 665 NLLXGIDWMLDDIASRIFTL 724
           +LL  +DWMLD I + I  L
Sbjct: 464 SLLFAVDWMLDRIRTSINVL 483


>AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 21.8 bits (44), Expect = 8.8
 Identities = 11/23 (47%), Positives = 16/23 (69%), Gaps = 1/23 (4%)
 Frame = +3

Query: 168 IIMGFL-TILKKLRQKEKEMRIL 233
           I++G + T+ KKL   + EMRIL
Sbjct: 145 IVIGIVKTVAKKLHGTDIEMRIL 167


>AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 21.8 bits (44), Expect = 8.8
 Identities = 11/23 (47%), Positives = 16/23 (69%), Gaps = 1/23 (4%)
 Frame = +3

Query: 168 IIMGFL-TILKKLRQKEKEMRIL 233
           I++G + T+ KKL   + EMRIL
Sbjct: 145 IVIGIVKTVAKKLHGTDIEMRIL 167


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 193,577
Number of Sequences: 438
Number of extensions: 3644
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29146299
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)