Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP06_F_M12
         (925 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF003151-19|AAK18922.1|  988|Caenorhabditis elegans Hypothetical...    33   0.22 
AL032652-4|CAB63398.1|  486|Caenorhabditis elegans Hypothetical ...    33   0.38 
Z74472-4|CAA98942.1|  301|Caenorhabditis elegans Hypothetical pr...    30   2.7  
V00147-1|CAA23463.1|  296|Caenorhabditis elegans protein ( Caeno...    30   2.7  
J01047-1|AAA27988.1|  296|Caenorhabditis elegans protein ( C.ele...    30   2.7  
U53333-6|AAA96159.2|  304|Caenorhabditis elegans Collagen protei...    29   3.6  
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def...    29   4.7  
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def...    29   4.7  
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.    29   4.7  
Z46676-8|CAB60993.2|  388|Caenorhabditis elegans Hypothetical pr...    28   8.2  
U80439-8|AAB37646.3| 1724|Caenorhabditis elegans Hypothetical pr...    28   8.2  
U41557-6|AAA83307.1|  589|Caenorhabditis elegans Collagen sequen...    28   8.2  
U24189-3|AAC47514.1|  398|Caenorhabditis elegans RRM-type RNA bi...    28   8.2  

>AF003151-19|AAK18922.1|  988|Caenorhabditis elegans Hypothetical
           protein D1007.7 protein.
          Length = 988

 Score = 33.5 bits (73), Expect = 0.22
 Identities = 12/18 (66%), Positives = 12/18 (66%)
 Frame = -2

Query: 924 PPXGXGXPPPXGXPPRGF 871
           PP G G PPP G PP GF
Sbjct: 720 PPPGVGPPPPQGIPPMGF 737


>AL032652-4|CAB63398.1|  486|Caenorhabditis elegans Hypothetical
           protein Y63D3A.5 protein.
          Length = 486

 Score = 32.7 bits (71), Expect = 0.38
 Identities = 21/71 (29%), Positives = 24/71 (33%), Gaps = 1/71 (1%)
 Frame = +1

Query: 715 PPLXGXGDPXGXIKKXXG-FSPXXPPXXPXFXXPXXKXKNSPXFPGGKGXXXXKTPGGXP 891
           P     G P   +    G F+P      P    P      +P  PGG G      PGG P
Sbjct: 359 PSPQSFGGPPPPVSSAPGNFAPPPQSGPPGAFAPPPSAFGAPQGPGGPGGYGPPPPGG-P 417

Query: 892 XGXGXAXPPGG 924
              G   PP G
Sbjct: 418 GAPGSYGPPQG 428



 Score = 30.7 bits (66), Expect = 1.5
 Identities = 19/57 (33%), Positives = 20/57 (35%), Gaps = 4/57 (7%)
 Frame = -3

Query: 923 PPGGXAXPXPLGXPPGVLXXXXPFPPGKXGEFXXLXXGXKKXG----XXGGXXGENP 765
           PPGG   P   G P G      P PPG  G +     G    G       G  G NP
Sbjct: 413 PPGGPGAPGSYGPPQGGPGGFGPPPPGGPGAYGPPPTGFPPVGAPPPGAAGAPGGNP 469


>Z74472-4|CAA98942.1|  301|Caenorhabditis elegans Hypothetical
           protein F23H12.4 protein.
          Length = 301

 Score = 29.9 bits (64), Expect = 2.7
 Identities = 19/69 (27%), Positives = 21/69 (30%)
 Frame = +1

Query: 715 PPLXGXGDPXGXIKKXXGFSPXXPPXXPXFXXPXXKXKNSPXFPGGKGXXXXKTPGGXPX 894
           P   G   P G   +     P   P  P    P      +P  PG  G      P G P 
Sbjct: 182 PGSPGPRGPPGPAGEAGAPGPAGEPGTPAISEPLTP--GAPGEPGDSGPPGPPGPPGAPG 239

Query: 895 GXGXAXPPG 921
             G   PPG
Sbjct: 240 NDGPPGPPG 248


>V00147-1|CAA23463.1|  296|Caenorhabditis elegans protein (
           Caenorhabditis elegansgene Col-1 coding for a collagen.
           ).
          Length = 296

 Score = 29.9 bits (64), Expect = 2.7
 Identities = 19/69 (27%), Positives = 21/69 (30%)
 Frame = +1

Query: 715 PPLXGXGDPXGXIKKXXGFSPXXPPXXPXFXXPXXKXKNSPXFPGGKGXXXXKTPGGXPX 894
           P   G   P G   +     P   P  P    P      +P  PG  G      P G P 
Sbjct: 177 PGSPGPRGPPGPAGEAGAPGPAGEPGTPAISEPLTP--GAPGEPGDSGPPGPPGPPGAPG 234

Query: 895 GXGXAXPPG 921
             G   PPG
Sbjct: 235 NDGPPGPPG 243


>J01047-1|AAA27988.1|  296|Caenorhabditis elegans protein (
           C.elegans (nematode)collagen 1 (col-1) gene, complete
           cds. ).
          Length = 296

 Score = 29.9 bits (64), Expect = 2.7
 Identities = 19/69 (27%), Positives = 21/69 (30%)
 Frame = +1

Query: 715 PPLXGXGDPXGXIKKXXGFSPXXPPXXPXFXXPXXKXKNSPXFPGGKGXXXXKTPGGXPX 894
           P   G   P G   +     P   P  P    P      +P  PG  G      P G P 
Sbjct: 177 PGSPGPRGPPGPAGEAGAPGPAGEPGTPAISEPLTP--GAPGEPGDSGPPGPPGPPGAPG 234

Query: 895 GXGXAXPPG 921
             G   PPG
Sbjct: 235 NDGPPGPPG 243


>U53333-6|AAA96159.2|  304|Caenorhabditis elegans Collagen protein
           33 protein.
          Length = 304

 Score = 29.5 bits (63), Expect = 3.6
 Identities = 17/49 (34%), Positives = 18/49 (36%)
 Frame = +1

Query: 775 PXXPPXXPXFXXPXXKXKNSPXFPGGKGXXXXKTPGGXPXGXGXAXPPG 921
           P  PP  P    P  +    P  PGG G    K P G P   G    PG
Sbjct: 225 PQGPPGPPGQAGPDGQ----PGAPGGPGTPGSKGPPGNPGAPGADGKPG 269


>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
           protein 1, isoformb protein.
          Length = 1437

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 16/44 (36%), Positives = 17/44 (38%)
 Frame = +1

Query: 448 PPPPGXRVFXXXPPXPFPPXKTXTPXFXXGGXVFPPXXGVXXFS 579
           PPPPG       PP P PP     P    G    PP  G+   S
Sbjct: 714 PPPPGLPPITGGPPPPPPPG--GLPPITGGPPPPPPPGGLPPIS 755


>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
           protein 1, isoforma protein.
          Length = 1435

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 16/44 (36%), Positives = 17/44 (38%)
 Frame = +1

Query: 448 PPPPGXRVFXXXPPXPFPPXKTXTPXFXXGGXVFPPXXGVXXFS 579
           PPPPG       PP P PP     P    G    PP  G+   S
Sbjct: 714 PPPPGLPPITGGPPPPPPPG--GLPPITGGPPPPPPPGGLPPIS 755


>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
          Length = 1018

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 16/44 (36%), Positives = 17/44 (38%)
 Frame = +1

Query: 448 PPPPGXRVFXXXPPXPFPPXKTXTPXFXXGGXVFPPXXGVXXFS 579
           PPPPG       PP P PP     P    G    PP  G+   S
Sbjct: 297 PPPPGLPPITGGPPPPPPPG--GLPPITGGPPPPPPPGGLPPIS 338


>Z46676-8|CAB60993.2|  388|Caenorhabditis elegans Hypothetical
           protein C08B11.5 protein.
          Length = 388

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 17/49 (34%), Positives = 20/49 (40%)
 Frame = +1

Query: 448 PPPPGXRVFXXXPPXPFPPXKTXTPXFXXGGXVFPPXXGVXXFSPXXXG 594
           PPPP   ++   PP P PP +T  P    G    PP      F P   G
Sbjct: 288 PPPPSSGMWP--PPPPPPPGRTPGPPGMPG---MPPPPPPSRFGPPGMG 331


>U80439-8|AAB37646.3| 1724|Caenorhabditis elegans Hypothetical
           protein C01G8.9a protein.
          Length = 1724

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 12/33 (36%), Positives = 13/33 (39%)
 Frame = +1

Query: 826 KNSPXFPGGKGXXXXKTPGGXPXGXGXAXPPGG 924
           K+    PGG G      PG  P       PPGG
Sbjct: 434 KSQHGAPGGSGAPPPGPPGAYPGNGAPGGPPGG 466


>U41557-6|AAA83307.1|  589|Caenorhabditis elegans Collagen sequence
           x-hybridizingprotein 1 protein.
          Length = 589

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 13/30 (43%), Positives = 14/30 (46%)
 Frame = -3

Query: 920 PGGXAXPXPLGXPPGVLXXXXPFPPGKXGE 831
           P G A P P G PPG      P PP +  E
Sbjct: 553 PSGPAGPAPSGEPPGPFDPSGP-PPSESSE 581


>U24189-3|AAC47514.1|  398|Caenorhabditis elegans RRM-type RNA
           binding protein protein.
          Length = 398

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 17/49 (34%), Positives = 20/49 (40%)
 Frame = +1

Query: 448 PPPPGXRVFXXXPPXPFPPXKTXTPXFXXGGXVFPPXXGVXXFSPXXXG 594
           PPPP   ++   PP P PP +T  P    G    PP      F P   G
Sbjct: 298 PPPPSSGMWP--PPPPPPPGRTPGPPGMPG---MPPPPPPSRFGPPGMG 341


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,364,066
Number of Sequences: 27780
Number of extensions: 213276
Number of successful extensions: 1272
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 446
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1135
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2370744068
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)