Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP06_F_M11
         (921 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17A5.13 |||GTP cyclohydrolase |Schizosaccharomyces pombe|chr...   151   2e-37
SPBC16G5.01 |rpn12|mts3, SPBC342.07|19S proteasome regulatory su...    28   1.6  
SPCC645.13 |||transcription elongation regulator|Schizosaccharom...    28   1.6  
SPAC959.03c |||U3 snoRNP-associated protein Utp7|Schizosaccharom...    28   1.6  
SPAC1952.09c |||acetyl-CoA hydrolase|Schizosaccharomyces pombe|c...    28   2.1  
SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr ...    26   6.5  
SPBC1A4.03c |top2|ptr11|DNA topoisomerase II|Schizosaccharomyces...    26   6.5  
SPAC31A2.14 |||WD repeat protein, human WRDR48 family|Schizosacc...    26   6.5  
SPBC1271.11 |||tricarboxylate transporter |Schizosaccharomyces p...    26   6.5  
SPBC947.01 |||AAA family ATPase, unknown biological role|Schizos...    26   8.6  

>SPAC17A5.13 |||GTP cyclohydrolase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 235

 Score =  151 bits (365), Expect = 2e-37
 Identities = 67/107 (62%), Positives = 88/107 (82%)
 Frame = +2

Query: 500 EALLPDMANSYRLLLTGLGEDPERAGLLKTPERAAKAMLFFTKGYDQSLEEVLNNAIFDE 679
           E  +  ++N+   +L  LGEDPER GLL TPER AKAML+FTKGY+Q+L EV+N A+F E
Sbjct: 49  EEKVKKISNAISTILECLGEDPERQGLLGTPERYAKAMLYFTKGYEQNLTEVINEAVFQE 108

Query: 680 DTDEMVVVKDIEMFSMCEHHLVPFYGKVSIGYLPQGKILGLSKLARI 820
           D +EMV+V+DI++FS+CEHHLVPF GK+ IGY+P+ ++LGLSKLARI
Sbjct: 109 DHEEMVIVRDIDVFSLCEHHLVPFIGKIHIGYIPRKRVLGLSKLARI 155


>SPBC16G5.01 |rpn12|mts3, SPBC342.07|19S proteasome regulatory
           subunit Rpn12|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 270

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 23/84 (27%), Positives = 34/84 (40%)
 Frame = +2

Query: 578 LLKTPERAAKAMLFFTKGYDQSLEEVLNNAIFDEDTDEMVVVKDIEMFSMCEHHLVPFYG 757
           LLK     AK  LF     D+       N +F+      +   DIE F+     ++PFY 
Sbjct: 25  LLKLKVELAKQNLFVPTS-DKEKASFARN-VFEYGVLVSIQTCDIESFARYASQVIPFYH 82

Query: 758 KVSIGYLPQGKILGLSKLARIVEN 829
              +     G + GL+ L  + EN
Sbjct: 83  DSLVPSSRMGLVTGLNLLYLLSEN 106


>SPCC645.13 |||transcription elongation
           regulator|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 721

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 17/48 (35%), Positives = 20/48 (41%)
 Frame = +1

Query: 730 RTPSGAVLRKGLHRVPATRKNFGSQQTGQDRGKYSPAVFRYKTXDEXN 873
           RTP G+   K  H  P+TRK  GS  T     K S    +    D  N
Sbjct: 148 RTPIGSTTPKSSHSPPSTRKRRGSVGTTATHTKRSKNAPKTSPKDASN 195


>SPAC959.03c |||U3 snoRNP-associated protein
           Utp7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 520

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 15/39 (38%), Positives = 22/39 (56%)
 Frame = +2

Query: 734 HHLVPFYGKVSIGYLPQGKILGLSKLARIVENILPPSSG 850
           +HL+P    V + Y P   ILG+   A+  E+I+ P SG
Sbjct: 345 NHLLPSSSVVDLHYCPYEDILGIGH-AKGFESIIVPGSG 382


>SPAC1952.09c |||acetyl-CoA hydrolase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 521

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 16/81 (19%), Positives = 31/81 (38%), Gaps = 1/81 (1%)
 Frame = +2

Query: 326 VGKYKKAPEALKSFNLADAE-SELEVPGTPMTPRTSTTPGHENCTFHHDLELDHRPPTRE 502
           +GK     +  K   + +A+  ++    +P    +    GH    FHH++ +   P    
Sbjct: 212 IGKPYIKVDPKKVIGIVEADYGDITCANSPQDETSQAIAGHLVDFFHHEVSVGRLPKNLH 271

Query: 503 ALLPDMANSYRLLLTGLGEDP 565
            L   + N    ++ GL   P
Sbjct: 272 PLQSGIGNIANAIIGGLAHSP 292


>SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1854

 Score = 26.2 bits (55), Expect = 6.5
 Identities = 19/70 (27%), Positives = 31/70 (44%), Gaps = 4/70 (5%)
 Frame = -3

Query: 373  QVKALQGFWSFFVFTNERTLLRSVTVLFLLGYRITYGSRTDATY----QRRWRHCRFRVQ 206
            Q  A  G   FFV  N  +++  +T LF+      Y  RT + +    QR W   R +++
Sbjct: 1182 QTNASSGNAMFFVLFNLVSMIYILT-LFIAIIISNYAERTGSAFFTAEQRAWLELRRKIK 1240

Query: 205  IFSVXRRPCL 176
                 +RP +
Sbjct: 1241 SMRPSKRPAI 1250


>SPBC1A4.03c |top2|ptr11|DNA topoisomerase II|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1485

 Score = 26.2 bits (55), Expect = 6.5
 Identities = 14/41 (34%), Positives = 23/41 (56%)
 Frame = +2

Query: 314  KGSFVGKYKKAPEALKSFNLADAESELEVPGTPMTPRTSTT 436
            K S   K KKA  ++K  +  D + +  +PG+  TP+ S+T
Sbjct: 1384 KASAKNKGKKA-SSVKKQSPEDDDDDFIIPGSSSTPKASST 1423


>SPAC31A2.14 |||WD repeat protein, human WRDR48
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 962

 Score = 26.2 bits (55), Expect = 6.5
 Identities = 17/39 (43%), Positives = 23/39 (58%)
 Frame = -1

Query: 651 SSKLWSYPFVKKSIALAARSGVFKSPALSGSSPRPVSKS 535
           SSK     F+K S+  AA S VF S   S +SP+ +SK+
Sbjct: 687 SSKSLQTDFMKASVERAASSRVF-STGTSVTSPQALSKT 724


>SPBC1271.11 |||tricarboxylate transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 258

 Score = 26.2 bits (55), Expect = 6.5
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = -3

Query: 685 RVFIEDGVIQNLFQALVVSFREEEHSFGGTFGR 587
           R  I    +  +FQ+++ ++R+  HSF G  GR
Sbjct: 110 RAQISKTSVSQIFQSMIHNYRDLWHSFKGMCGR 142


>SPBC947.01 |||AAA family ATPase, unknown biological
           role|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 660

 Score = 25.8 bits (54), Expect = 8.6
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = +1

Query: 724 NVRTPSGAVLRKGLHRVPATRKNFGSQQ 807
           ++RT   +V ++G+HR     K FGSQ+
Sbjct: 633 SLRTIRPSVSQEGIHRYEEWNKQFGSQR 660


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,662,407
Number of Sequences: 5004
Number of extensions: 77722
Number of successful extensions: 234
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 223
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 234
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 468512460
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)