Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP06_F_M11
(921 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_0190 - 17708513-17708548,17708897-17709295 32 0.56
01_06_0909 - 32903520-32903828,32903899-32903973,32904068-329042... 31 1.7
01_06_0907 - 32897168-32897476,32897547-32897621,32897716-328978... 31 1.7
03_04_0157 + 17791540-17791681,17792809-17792908,17793386-177934... 30 2.3
08_01_0378 + 3360215-3360253,3360326-3360437,3362176-3362213,336... 29 3.9
07_01_0583 + 4338003-4338377,4338455-4338647,4338734-4339326 29 3.9
07_01_0866 - 7195305-7195756,7197171-7197447 29 5.2
05_05_0030 - 21698625-21698752,21699589-21699627,21699708-216998... 29 5.2
01_06_0808 + 32134765-32136570 29 5.2
01_06_0969 - 33472588-33474480,33475543-33475623,33475692-334757... 29 6.9
>06_03_0190 - 17708513-17708548,17708897-17709295
Length = 144
Score = 32.3 bits (70), Expect = 0.56
Identities = 17/38 (44%), Positives = 20/38 (52%)
Frame = -2
Query: 605 WRHVRASSRALPFQGPPPGR*VKACMS*PCPVTTPPWW 492
WR R SR GPPP R ++ + PC TT PWW
Sbjct: 7 WRGHRRRSR-----GPPPSRTSRSRLR-PCLATTRPWW 38
>01_06_0909 - 32903520-32903828,32903899-32903973,32904068-32904235,
32904508-32904565,32904638-32904879,32905145-32905216,
32905865-32905943,32906734-32907062,32907137-32907256,
32907355-32907429,32908260-32908342,32908942-32908984,
32909271-32909429,32910203-32910281,32910685-32910755,
32910847-32910946,32911023-32911229,32911348-32911442,
32912362-32912436,32912621-32912713,32913078-32913182,
32913851-32913921,32914943-32915096,32916035-32916098,
32916717-32916800,32917543-32917589,32918352-32918411,
32918521-32918592
Length = 1062
Score = 30.7 bits (66), Expect = 1.7
Identities = 20/53 (37%), Positives = 31/53 (58%), Gaps = 3/53 (5%)
Frame = +2
Query: 560 DPERAGLLKTPERAAKAMLFFT-KGYDQSLEEVLNNAIFDE--DTDEMVVVKD 709
DP+ A +++ PER + L+FT + + SL VL FDE D +E +V K+
Sbjct: 858 DPKYANVME-PERRVRTRLYFTSESHIHSLMNVLRYCNFDESMDGEESLVCKN 909
>01_06_0907 -
32897168-32897476,32897547-32897621,32897716-32897883,
32898156-32898213,32898286-32898527,32898630-32898726,
32898827-32898921
Length = 347
Score = 30.7 bits (66), Expect = 1.7
Identities = 20/53 (37%), Positives = 31/53 (58%), Gaps = 3/53 (5%)
Frame = +2
Query: 560 DPERAGLLKTPERAAKAMLFFT-KGYDQSLEEVLNNAIFDE--DTDEMVVVKD 709
DP+ A +++ PER + L+FT + + SL VL FDE D +E +V K+
Sbjct: 143 DPKYANVME-PERRVRTRLYFTSESHIHSLMNVLRYCNFDESMDGEESLVCKN 194
>03_04_0157 +
17791540-17791681,17792809-17792908,17793386-17793477,
17793562-17793620,17794135-17795637,17796478-17796720,
17796831-17797145,17797571-17797573,17798399-17798638,
17798975-17799259,17799335-17799556,17800105-17800266,
17800411-17800545,17802452-17802688,17802787-17802960,
17803692-17803934
Length = 1384
Score = 30.3 bits (65), Expect = 2.3
Identities = 14/38 (36%), Positives = 23/38 (60%)
Frame = +2
Query: 689 EMVVVKDIEMFSMCEHHLVPFYGKVSIGYLPQGKILGL 802
++V+ +DI+M + + H F GK +G+ GKIL L
Sbjct: 876 KLVLDRDIDMMTTGQRH--SFLGKYKVGFTDDGKILAL 911
>08_01_0378 +
3360215-3360253,3360326-3360437,3362176-3362213,
3363949-3363966,3364629-3364847,3364937-3366727,
3367764-3367827,3367915-3367975,3368685-3368694
Length = 783
Score = 29.5 bits (63), Expect = 3.9
Identities = 22/73 (30%), Positives = 32/73 (43%), Gaps = 6/73 (8%)
Frame = -1
Query: 651 SSKLWSYPFVKKSIALAARSGVFKSPALSGSSPRPVSKSLYELAMSG------NNASLVG 490
SS L S +I AAR P + G++P P ++L E A N AS+V
Sbjct: 363 SSMLVSTLLSNPAIHAAARLAASYWPTVDGNTPDPNQENLSESAQGSHAGSPPNMASIVT 422
Query: 489 GLWSNSRSWWKVQ 451
+ + +WW Q
Sbjct: 423 ATVAAASAWWATQ 435
>07_01_0583 + 4338003-4338377,4338455-4338647,4338734-4339326
Length = 386
Score = 29.5 bits (63), Expect = 3.9
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = +2
Query: 476 LDHRPPTREALLPDMANSYRLLLTGLGEDPERAG 577
++ RPP A P + +R LL + +PERAG
Sbjct: 1 METRPPRAAAPAPARVSRFRRLLVRVSAEPERAG 34
>07_01_0866 - 7195305-7195756,7197171-7197447
Length = 242
Score = 29.1 bits (62), Expect = 5.2
Identities = 22/88 (25%), Positives = 34/88 (38%)
Frame = +2
Query: 488 PPTREALLPDMANSYRLLLTGLGEDPERAGLLKTPERAAKAMLFFTKGYDQSLEEVLNNA 667
P + ALL +A + LL GE+ A P A + + GYD +++
Sbjct: 60 PQSATALLHLLAVALLHLLPHQGEEAPLAAAAADPAPATRREVVLCIGYDDDDLALVDVT 119
Query: 668 IFDEDTDEMVVVKDIEMFSMCEHHLVPF 751
D D M ++I + H PF
Sbjct: 120 YPKRDVDNMQWFREITLLYRGHRHSAPF 147
>05_05_0030 - 21698625-21698752,21699589-21699627,21699708-21699822,
21699927-21699992,21701064-21701203,21701424-21701473,
21701608-21702045,21702757-21702839,21702941-21702977,
21703366-21703457,21703531-21703615,21703950-21704029,
21704049-21704105,21704350-21704747,21706322-21707223,
21707331-21707421,21708123-21710273,21710375-21710813,
21711180-21711299
Length = 1836
Score = 29.1 bits (62), Expect = 5.2
Identities = 15/33 (45%), Positives = 23/33 (69%), Gaps = 3/33 (9%)
Frame = +2
Query: 635 DQSLEEVLNNAI--FDEDTDEMVVVK-DIEMFS 724
++ E+L N I FDEDTDE+ ++K ++E FS
Sbjct: 1576 EEECRELLENDIEDFDEDTDEIPIIKLNMEAFS 1608
>01_06_0808 + 32134765-32136570
Length = 601
Score = 29.1 bits (62), Expect = 5.2
Identities = 22/82 (26%), Positives = 40/82 (48%)
Frame = +2
Query: 593 ERAAKAMLFFTKGYDQSLEEVLNNAIFDEDTDEMVVVKDIEMFSMCEHHLVPFYGKVSIG 772
+R +AM F + Y S E+ L+N +F E ++ + E+ L+ FY V+IG
Sbjct: 228 KRWNRAMKVFVQVYLTS-EKRLSNHVFGELSESTADLCFYEISLSSVMQLLTFYESVAIG 286
Query: 773 YLPQGKILGLSKLARIVENILP 838
K+ L + ++ ++LP
Sbjct: 287 PPKPEKLFRLLDMYEVLNDLLP 308
>01_06_0969 -
33472588-33474480,33475543-33475623,33475692-33475740,
33475866-33476281,33477208-33477447
Length = 892
Score = 28.7 bits (61), Expect = 6.9
Identities = 12/22 (54%), Positives = 16/22 (72%)
Frame = +2
Query: 497 REALLPDMANSYRLLLTGLGED 562
REA LPD+ SY ++TGL E+
Sbjct: 702 REARLPDLRTSYLTIMTGLTEN 723
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,441,796
Number of Sequences: 37544
Number of extensions: 600649
Number of successful extensions: 1528
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1461
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1527
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2624101760
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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