Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP06_F_M09
         (949 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_01_0319 - 2396835-2396951,2397035-2397105,2397219-2397297,239...    62   8e-10
12_01_0906 + 8799284-8799441,8800865-8801690,8801933-8802055,880...    61   1e-09
06_03_1489 + 30492702-30493760                                         30   3.1  
12_01_0979 - 9914779-9915327,9915409-9915536,9915947-9916050,991...    28   9.4  
05_07_0261 + 28764571-28764733,28766039-28766153,28766241-287663...    28   9.4  

>11_01_0319 -
           2396835-2396951,2397035-2397105,2397219-2397297,
           2397417-2397458,2397670-2397723,2397836-2397868,
           2397959-2398039,2398144-2398230,2398313-2398388,
           2398633-2398808,2398912-2399034,2399249-2399361,
           2399521-2399632,2400054-2400273,2401986-2402314,
           2402408-2402713,2403580-2403878,2404079-2404181,
           2404266-2404369,2404840-2404906,2404911-2405076,
           2405241-2405956
          Length = 1157

 Score = 61.7 bits (143), Expect = 8e-10
 Identities = 35/104 (33%), Positives = 49/104 (47%)
 Frame = +1

Query: 457 QKEPETKKDASTKPERRAKDTDMLNTRTGGAYLPPAXLRMMQAXITDKSSIAYQRLAWXA 636
           ++ P+ +K+ +  P       +M+  RTGG Y+PP  +  M   + DKSS  YQRL+W A
Sbjct: 82  RRSPQRRKEPTPPPPLLP---EMIPGRTGGIYIPPFRMAQMMREVEDKSSAEYQRLSWDA 138

Query: 637 LKKSXXXXXXXXXXXXXXXXXXXLIXQXPLSEGXGLLCRSCXPS 768
           LKKS                   L  +  L  G GL C+SC  S
Sbjct: 139 LKKSINGLVNKVNATNVKNIVPELFAEN-LVRGRGLFCQSCIKS 181


>12_01_0906 +
           8799284-8799441,8800865-8801690,8801933-8802055,
           8802144-8802210,8802611-8802714,8802798-8802900,
           8803103-8803401,8804009-8804263,8805471-8805776,
           8805866-8806194,8806829-8806916,8807027-8807164,
           8807438-8807458
          Length = 938

 Score = 61.3 bits (142), Expect = 1e-09
 Identities = 34/107 (31%), Positives = 49/107 (45%)
 Frame = +1

Query: 448 KDTQKEPETKKDASTKPERRAKDTDMLNTRTGGAYLPPAXLRMMQAXITDKSSIAYQRLA 627
           ++ ++ P+ K+     P       +++  RTGG Y+PP  +  M   + DKSS  YQRL+
Sbjct: 177 EERRRSPDRKEPTPPLPPPPPLLPELIPGRTGGIYIPPFRMAQMMREVEDKSSPEYQRLS 236

Query: 628 WXALKKSXXXXXXXXXXXXXXXXXXXLIXQXPLSEGXGLLCRSCXPS 768
           W ALKKS                   L  +  L  G GL C+SC  S
Sbjct: 237 WDALKKSINGLVNKVNATNIKNIVPELFAEN-LVRGRGLFCQSCIKS 282


>06_03_1489 + 30492702-30493760
          Length = 352

 Score = 29.9 bits (64), Expect = 3.1
 Identities = 12/27 (44%), Positives = 19/27 (70%)
 Frame = +1

Query: 442 RVKDTQKEPETKKDASTKPERRAKDTD 522
           R+++ +  P T  DAS+KP RR ++TD
Sbjct: 114 RLEEGRGGPPTTGDASSKPRRRGRETD 140


>12_01_0979 -
           9914779-9915327,9915409-9915536,9915947-9916050,
           9919832-9919946,9921036-9921528
          Length = 462

 Score = 28.3 bits (60), Expect = 9.4
 Identities = 13/26 (50%), Positives = 18/26 (69%)
 Frame = -3

Query: 563 AGGRYAPPVLVFNISVSXARLSGLVE 486
           AGG+   P LVF +S + A L+GL+E
Sbjct: 179 AGGKRLRPALVFLVSRATAELAGLLE 204


>05_07_0261 +
           28764571-28764733,28766039-28766153,28766241-28766344,
           28766571-28766698,28766765-28767328
          Length = 357

 Score = 28.3 bits (60), Expect = 9.4
 Identities = 13/26 (50%), Positives = 18/26 (69%)
 Frame = -3

Query: 563 AGGRYAPPVLVFNISVSXARLSGLVE 486
           AGG+   P LVF +S + A L+GL+E
Sbjct: 69  AGGKRLRPALVFLVSRATAELAGLLE 94


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,085,983
Number of Sequences: 37544
Number of extensions: 246723
Number of successful extensions: 604
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 584
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 602
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2729534420
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)