Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP06_F_M08
(924 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_0880 + 22203440-22204324,22204763-22204876,22204964-222054... 37 0.026
02_04_0577 - 24011542-24011906,24012285-24012385,24013029-240132... 31 0.98
09_04_0616 + 18977421-18977907,18977984-18978245,18978903-18979149 29 3.9
07_03_1090 + 23891294-23892222,23892317-23892516,23895241-238954... 29 3.9
07_03_0266 - 16015949-16016524,16016746-16016782,16017274-160178... 29 3.9
07_01_0134 + 977527-977757,977842-977937,978479-978519,979550-97... 29 3.9
07_03_1709 - 28873172-28873327,28873519-28873584,28874067-288741... 29 5.2
03_04_0162 + 17858802-17861168 29 6.9
03_06_0451 + 34025048-34027099,34028210-34028242 28 9.1
>08_02_0880 +
22203440-22204324,22204763-22204876,22204964-22205455,
22205646-22205819,22206589-22206978,22209927-22210022,
22210645-22210760,22210872-22211042,22211126-22211285,
22211388-22211573,22211665-22211793,22211918-22211996,
22212159-22212268
Length = 1033
Score = 36.7 bits (81), Expect = 0.026
Identities = 23/59 (38%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
Frame = -2
Query: 530 PT*LWSGRTSTSCPSS-RDKDECTRVCGCVRLRSALRRSGSPIPQPRE*TITSAEPPPP 357
PT L G + + P S R C+ +R + A RS SP P PR T +EPPPP
Sbjct: 100 PTSLAGGGAAHTPPGSGRSLSRCSSTSSRIRKKFAWLRSPSPAPAPR--APTPSEPPPP 156
>02_04_0577 -
24011542-24011906,24012285-24012385,24013029-24013287,
24014176-24014264,24015331-24015419
Length = 300
Score = 31.5 bits (68), Expect = 0.98
Identities = 28/87 (32%), Positives = 35/87 (40%)
Frame = -2
Query: 617 GMFW*KCNSRMFSGXITVLSFSTRSXVCPPT*LWSGRTSTSCPSSRDKDECTRVCGCVRL 438
G F +C R+ SG + +RS P + GR+ + P R R R
Sbjct: 95 GHFARECRLRIGSGGLGSGRRRSRSRSRSPR--YRGRSRSRSPRYRRSPSYGRRSYSPRD 152
Query: 437 RSALRRSGSPIPQPRE*TITSAEPPPP 357
RS RRS S P P S PPPP
Sbjct: 153 RSPKRRSYSRSPPPARARSYSRSPPPP 179
>09_04_0616 + 18977421-18977907,18977984-18978245,18978903-18979149
Length = 331
Score = 29.5 bits (63), Expect = 3.9
Identities = 18/45 (40%), Positives = 23/45 (51%), Gaps = 3/45 (6%)
Frame = +1
Query: 340 YKKVDSGGGGSAEVMVYSLGWGMGEPE---RRSADRKRTQPHTLV 465
Y+ GGGGS + Y+ G G EPE SA + TQP L+
Sbjct: 275 YRGGGGGGGGSRPPIYYNGGGGAHEPETMTASSASTRCTQPWLLL 319
>07_03_1090 +
23891294-23892222,23892317-23892516,23895241-23895482,
23895771-23896461,23896486-23896562
Length = 712
Score = 29.5 bits (63), Expect = 3.9
Identities = 16/45 (35%), Positives = 25/45 (55%)
Frame = +1
Query: 349 VDSGGGGSAEVMVYSLGWGMGEPERRSADRKRTQPHTLVHSSLSL 483
++SGGGG+ + G G+ ERR D KR Q ++ SL++
Sbjct: 321 LNSGGGGAGSSDPAARRGGSGKQERRLLDPKRLQNVAIMLKSLNV 365
>07_03_0266 -
16015949-16016524,16016746-16016782,16017274-16017884,
16018004-16018081,16018117-16018143
Length = 442
Score = 29.5 bits (63), Expect = 3.9
Identities = 17/52 (32%), Positives = 28/52 (53%)
Frame = +1
Query: 418 ERRSADRKRTQPHTLVHSSLSLDDGHEVDVLPLHNQVGGHTXLLVLNDSTVI 573
+RRS DR+R +P + S++ D + V + L +G T + LN TV+
Sbjct: 8 QRRSMDRRRIRPDVEI-ESVADDSANYVQNIRLVIDIGDRTIQVPLNGHTVV 58
>07_01_0134 +
977527-977757,977842-977937,978479-978519,979550-979661,
980100-980180,980502-980567
Length = 208
Score = 29.5 bits (63), Expect = 3.9
Identities = 15/37 (40%), Positives = 18/37 (48%)
Frame = +1
Query: 355 SGGGGSAEVMVYSLGWGMGEPERRSADRKRTQPHTLV 465
SGGGG+A L G P RR R R+ P +V
Sbjct: 9 SGGGGAAPEAQQQLSGGGDTPRRRRPTRSRSDPLLIV 45
>07_03_1709 -
28873172-28873327,28873519-28873584,28874067-28874127,
28875406-28875462,28876301-28876531,28876685-28876799,
28876897-28877136,28877222-28877316,28877406-28877585,
28877663-28877839,28877920-28878890
Length = 782
Score = 29.1 bits (62), Expect = 5.2
Identities = 14/27 (51%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Frame = +1
Query: 355 SGGGGSAEVMVYSLGWGMGEP-ERRSA 432
S GGG + Y+LGW G P RRSA
Sbjct: 191 SPGGGDGGLFSYNLGWANGGPGHRRSA 217
>03_04_0162 + 17858802-17861168
Length = 788
Score = 28.7 bits (61), Expect = 6.9
Identities = 15/34 (44%), Positives = 18/34 (52%)
Frame = +1
Query: 355 SGGGGSAEVMVYSLGWGMGEPERRSADRKRTQPH 456
SGGGG EV+ SL W G+ RS QP+
Sbjct: 750 SGGGGGGEVVEGSLSWVSGKHVMRSPIVAVPQPY 783
>03_06_0451 + 34025048-34027099,34028210-34028242
Length = 694
Score = 28.3 bits (60), Expect = 9.1
Identities = 14/31 (45%), Positives = 17/31 (54%)
Frame = -2
Query: 512 GRTSTSCPSSRDKDECTRVCGCVRLRSALRR 420
G + S + KDE R+C RLR ALRR
Sbjct: 69 GLVALSLDTVATKDEFVRLCATGRLRDALRR 99
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,873,002
Number of Sequences: 37544
Number of extensions: 476217
Number of successful extensions: 1512
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1455
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1508
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2635816500
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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