Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP06_F_M04
         (923 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC8D2.03c |hhf2|ams3, h4.2|histone H4 h4.2|Schizosaccharomyces...   142   8e-35
SPBC1105.12 |hhf3|h4.3|histone H4 h4.3|Schizosaccharomyces pombe...   142   8e-35
SPAC1834.03c |hhf1|h4.1|histone H4 h4.1|Schizosaccharomyces pomb...   142   8e-35
SPBC800.13 |||histone H4 variant|Schizosaccharomyces pombe|chr 2...    49   1e-06
SPAC1556.02c |sdh1||succinate dehydrogenase Sdh1|Schizosaccharom...    28   1.6  
SPCC162.02c |||AMP-binding dehydrogenase |Schizosaccharomyces po...    27   2.8  
SPAC6G9.02c |nop9||RNA-binding protein Nop9|Schizosaccharomyces ...    27   4.9  
SPAC3G9.06 |frs2||phenylalanine-tRNA ligase alpha subunit Frs2 |...    26   8.6  

>SPBC8D2.03c |hhf2|ams3, h4.2|histone H4 h4.2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 103

 Score =  142 bits (343), Expect = 8e-35
 Identities = 66/74 (89%), Positives = 72/74 (97%)
 Frame = +3

Query: 219 ITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVY 398
           ITKPAIRRLARRGGVKRIS L+YEETR VLK+FLENVIRDAVTYTEHAKRKTVT++DVVY
Sbjct: 30  ITKPAIRRLARRGGVKRISALVYEETRAVLKLFLENVIRDAVTYTEHAKRKTVTSLDVVY 89

Query: 399 ALKRQGRTLYGFGG 440
           +LKRQGRT+YGFGG
Sbjct: 90  SLKRQGRTIYGFGG 103


>SPBC1105.12 |hhf3|h4.3|histone H4 h4.3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 103

 Score =  142 bits (343), Expect = 8e-35
 Identities = 66/74 (89%), Positives = 72/74 (97%)
 Frame = +3

Query: 219 ITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVY 398
           ITKPAIRRLARRGGVKRIS L+YEETR VLK+FLENVIRDAVTYTEHAKRKTVT++DVVY
Sbjct: 30  ITKPAIRRLARRGGVKRISALVYEETRAVLKLFLENVIRDAVTYTEHAKRKTVTSLDVVY 89

Query: 399 ALKRQGRTLYGFGG 440
           +LKRQGRT+YGFGG
Sbjct: 90  SLKRQGRTIYGFGG 103


>SPAC1834.03c |hhf1|h4.1|histone H4 h4.1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 103

 Score =  142 bits (343), Expect = 8e-35
 Identities = 66/74 (89%), Positives = 72/74 (97%)
 Frame = +3

Query: 219 ITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVY 398
           ITKPAIRRLARRGGVKRIS L+YEETR VLK+FLENVIRDAVTYTEHAKRKTVT++DVVY
Sbjct: 30  ITKPAIRRLARRGGVKRISALVYEETRAVLKLFLENVIRDAVTYTEHAKRKTVTSLDVVY 89

Query: 399 ALKRQGRTLYGFGG 440
           +LKRQGRT+YGFGG
Sbjct: 90  SLKRQGRTIYGFGG 103


>SPBC800.13 |||histone H4 variant|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 479

 Score = 48.8 bits (111), Expect = 1e-06
 Identities = 22/60 (36%), Positives = 34/60 (56%)
 Frame = +3

Query: 234 IRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQ 413
           IR+LA     K+I+G + EE     ++F + +  D   + +HA RKT+   DVV  +KRQ
Sbjct: 391 IRKLANSYSQKKIAGSVIEELTTASELFFKQIANDLSAFADHAHRKTIDTQDVVLLMKRQ 450


>SPAC1556.02c |sdh1||succinate dehydrogenase
           Sdh1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 641

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 12/45 (26%), Positives = 17/45 (37%)
 Frame = -2

Query: 733 LKRXFVCLFVFENEKFNNNQTNQRHLRLIYNINDSKKFLKHVSRW 599
           L+    C     N   N  ++   H R  Y   D K ++KH   W
Sbjct: 562 LRNLLTCAVQTANAALNRKESRGAHAREDYPERDDKNWIKHTLTW 606


>SPCC162.02c |||AMP-binding dehydrogenase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 981

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 17/47 (36%), Positives = 26/47 (55%)
 Frame = +3

Query: 174 ALNVTGRCCVITSRXITKPAIRRLARRGGVKRISGLIYEETRGVLKV 314
           AL  TGR CVI ++  ++  +R L +R     IS L+Y E +   +V
Sbjct: 91  ALWATGRTCVIFNQIWSQQVVRVLVKR---LNISDLLYHEYKPKFEV 134


>SPAC6G9.02c |nop9||RNA-binding protein Nop9|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 655

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = +2

Query: 254 RWSETYLRSYIRRDPRRSQSVPRKRDPR 337
           +++   +R++IR D  RS+   +K DPR
Sbjct: 273 KYASQIMRAFIRIDFERSKKTKKKHDPR 300


>SPAC3G9.06 |frs2||phenylalanine-tRNA ligase alpha subunit Frs2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 499

 Score = 25.8 bits (54), Expect = 8.6
 Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
 Frame = +3

Query: 282 IYEETRGVLKVFLEN-VIRDAVTYTEHAKRKTVTAMDVVYALKRQG 416
           I +ET  VL    E+  I D+ T T+  KRK V    ++Y   R+G
Sbjct: 132 ITDETPKVLSEIKEHGTISDSKTLTDLKKRKLVERNKIMYFSLRKG 177


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,997,143
Number of Sequences: 5004
Number of extensions: 51399
Number of successful extensions: 160
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 156
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 160
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 467341524
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)