Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP06_F_M02
(916 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_01_0466 + 3702771-3703016,3703133-3703196,3703757-3704055,370... 138 4e-33
03_02_0658 + 10228794-10228943,10229042-10229105,10229510-102298... 110 2e-24
10_08_0983 + 22036489-22036505,22036814-22036928,22037040-220371... 30 2.2
01_05_0446 - 22334291-22334751,22335304-22336191,22336290-223365... 29 3.9
06_02_0096 - 11683368-11684581,11684705-11684773,11685356-116854... 29 5.2
03_03_0032 + 13927959-13930040,13930322-13930798 29 6.8
01_06_1149 - 34901338-34901466,34901707-34901838,34901940-349022... 29 6.8
04_03_0008 + 9296711-9298096 28 9.0
>05_01_0466 +
3702771-3703016,3703133-3703196,3703757-3704055,
3704666-3704881,3705216-3705422,3705697-3705789,
3706098-3706196,3706300-3706329,3706885-3706938,
3707533-3707586,3707658-3707735,3707927-3708018,
3708093-3708150,3708248-3708322,3708930-3708977,
3709131-3709228,3709446-3709521,3709659-3709721,
3709810-3709901,3710207-3710275,3710410-3710473,
3710545-3710610,3710700-3710777
Length = 772
Score = 138 bits (335), Expect = 4e-33
Identities = 66/140 (47%), Positives = 93/140 (66%)
Frame = +3
Query: 252 IAMVGLPARGKTYISKKLSRYLNWIGINTRVFNLGEYRRHATSAYTSHEFFRADNKEAMA 431
I +VGLPARGKT+ + KL+RYL W+G TR FN+G+YRR A S +FFR DN E +
Sbjct: 373 IVLVGLPARGKTFTAAKLTRYLRWLGHETRHFNVGKYRRLKHGANQSADFFRDDNPEGIE 432
Query: 432 IRQQCALDALQDVCEWLTKGGEVAVFDATNSTLDRRRMIRDLVVHKMGFKLFFVESICDD 611
R + A A++D+ +W+ GG+V +FDATNST RR M+ + + K+ F+E+IC+D
Sbjct: 433 ARNEVAALAMEDMIDWMHGGGQVGIFDATNSTRKRRYMLMKMA--EGNCKIIFLETICND 490
Query: 612 PRIIEQNIMEVKVSSPDYTN 671
P IIE+N+ SPDY +
Sbjct: 491 PNIIERNVRLKIQQSPDYAD 510
>03_02_0658 +
10228794-10228943,10229042-10229105,10229510-10229805,
10230689-10230904,10231409-10231549,10232407-10232499,
10234010-10234108,10234198-10234227,10234274-10234360,
10234636-10234689,10234758-10234835,10235128-10235202,
10236265-10236356,10236433-10236490,10236590-10236664,
10236966-10237013,10239003-10239065,10239167-10239258,
10239693-10239761,10239867-10239930,10240007-10240072,
10240170-10240271
Length = 703
Score = 110 bits (264), Expect = 2e-24
Identities = 68/173 (39%), Positives = 101/173 (58%), Gaps = 35/173 (20%)
Frame = +3
Query: 252 IAMVGLPARGKTYISKKLSRYLNWIGINTRVFNLGEYRR-----HATSAYTSH------E 398
I +VGLPARGKT+ + KL+RYL W+G T+ FN+G+YRR + TS S+ +
Sbjct: 318 IVLVGLPARGKTFTAAKLTRYLRWLGHETKHFNVGKYRRLKHGINQTSLSASNSVEQTAD 377
Query: 399 FFRADNKEAMAIRQQCALDALQDVCEWLTKGGEVAVFDATNSTLDRRRMI---------- 548
FFR DNKE + R + A A++D+ W+ +GG+V +FDATNST +RR M+
Sbjct: 378 FFRGDNKEGVEARNEVAALAMEDMLSWMQEGGQVGIFDATNSTRNRRNMLMKMAEGKCKS 437
Query: 549 -RDLVVHKMGFK------------LFFVESICDDPRIIEQNIMEVKVS-SPDY 665
+ ++V M + F+E+IC+D ++E+N M +KV SPDY
Sbjct: 438 PKLIIVPIMNINRKRRTYKAYSCTIIFLETICNDQNVLERN-MRLKVQRSPDY 489
>10_08_0983 +
22036489-22036505,22036814-22036928,22037040-22037194,
22037416-22037677,22037826-22038014
Length = 245
Score = 30.3 bits (65), Expect = 2.2
Identities = 25/95 (26%), Positives = 44/95 (46%), Gaps = 7/95 (7%)
Frame = +3
Query: 411 DNKEAM----AIRQQCALDALQDVCEWLTKGGEVAVFDATNSTLDRRRMIRDLVVHKMGF 578
D+KEA+ A Q A++ L D+C W+ K ++ TN+ ++ L+ F
Sbjct: 88 DDKEALYRRLAPEQLVAVEGLHDLCRWI-KDHKLKRAAVTNAPRSNAELMLSLLGLTEFF 146
Query: 579 KLFFVESICDDPRIIEQ---NIMEVKVSSPDYTNI 674
+ + S CD + +E+ +SPD+T I
Sbjct: 147 PVLVIGSECDRAKPFPDPYLKALELIGASPDHTFI 181
>01_05_0446 -
22334291-22334751,22335304-22336191,22336290-22336550,
22337129-22337588
Length = 689
Score = 29.5 bits (63), Expect = 3.9
Identities = 17/48 (35%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Frame = -1
Query: 598 DSTKKSLKPILWTTRSLIIRRRSK-VEFVASKTATSPPLVSHSHTSCN 458
D + + + + W+TR IIR +K +E++ S A PPLV H + S +
Sbjct: 513 DVARSNGRVLEWSTRISIIRGIAKGIEYLHSTRANKPPLV-HQNISAD 559
>06_02_0096 -
11683368-11684581,11684705-11684773,11685356-11685412,
11685553-11685609,11685758-11685817,11686770-11686893
Length = 526
Score = 29.1 bits (62), Expect = 5.2
Identities = 20/50 (40%), Positives = 23/50 (46%)
Frame = -1
Query: 475 SHTSCNASKAHCCLIAMASLLSALKNSWLVYADVACLLYSPRLNTLVLIP 326
SH SCN S AH AM + S +VY VA Y P T V+ P
Sbjct: 130 SHLSCNFSSAHMDTCAMDGDIRIHGRSGVVYV-VASSDYRPENATAVIRP 178
>03_03_0032 + 13927959-13930040,13930322-13930798
Length = 852
Score = 28.7 bits (61), Expect = 6.8
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = +3
Query: 267 LPARGKTYISKKLSRYLNWIGI 332
LP G ++SKK+ R LNW+ +
Sbjct: 225 LPYTGWVFVSKKIGRLLNWLQV 246
>01_06_1149 -
34901338-34901466,34901707-34901838,34901940-34902290,
34902301-34902619,34902756-34902784,34903641-34903715,
34903799-34903900,34904002-34904120,34904752-34904875,
34904976-34905026,34905143-34905241,34905751-34905861
Length = 546
Score = 28.7 bits (61), Expect = 6.8
Identities = 16/48 (33%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
Frame = +1
Query: 115 ANNILSAVLLGIP--RWMTKTELKAGSI*ISSSSVMENDRIMSTYHML 252
AN+ L +L P +W+ + G I I+ + V+ N RI TYH++
Sbjct: 483 ANDKLHVEVLSKPPKKWLIHGKETLGYIDINLADVISNKRINETYHLI 530
>04_03_0008 + 9296711-9298096
Length = 461
Score = 28.3 bits (60), Expect = 9.0
Identities = 12/44 (27%), Positives = 23/44 (52%)
Frame = +3
Query: 177 EGWKYLNKQFFGDGERSNYVNIPHVIAMVGLPARGKTYISKKLS 308
+GW + G+ SN+ N P + ++ + A+ +SKKL+
Sbjct: 180 QGWNQPRPYYQGENNNSNFSNQPSLKDLIFVQAKTTDALSKKLA 223
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,212,550
Number of Sequences: 37544
Number of extensions: 500495
Number of successful extensions: 1197
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1160
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1195
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2600672280
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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