Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP06_F_L24
         (897 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_05_0044 - 21819193-21819418,21819531-21820759                       31   1.2  
05_01_0356 + 2785410-2785670,2785843-2785960,2786800-2786891,278...    31   1.2  
06_03_0068 - 16177937-16178746                                         30   2.9  
07_03_1483 + 26881032-26882035,26882130-26882204,26882324-268828...    29   3.8  
07_01_0444 + 3357048-3357425,3357841-3357969,3358165-3358284,335...    28   8.8  

>05_05_0044 - 21819193-21819418,21819531-21820759
          Length = 484

 Score = 31.1 bits (67), Expect = 1.2
 Identities = 12/25 (48%), Positives = 19/25 (76%)
 Frame = +1

Query: 355 MPLLLTILERRRKRPQLMNRSTTWD 429
           MPL L +L+R++++ QL+ R T WD
Sbjct: 112 MPLSLRMLKRKKQQQQLVARQTRWD 136


>05_01_0356 +
           2785410-2785670,2785843-2785960,2786800-2786891,
           2787114-2787176,2787299-2787397,2787726-2787884,
           2788420-2788491,2788567-2788699,2788813-2788877,
           2789016-2789091,2789236-2789337,2789524-2789716,
           2790576-2790654,2792939-2793007,2793261-2793311,
           2793680-2793742,2793926-2794041,2794263-2794347,
           2794898-2794957,2795594-2795639,2796011-2796084,
           2796350-2796400,2796474-2796674,2796747-2796791,
           2797063-2797156,2797226-2797371,2797510-2797739,
           2798136-2798196,2798290-2798347,2799020-2799513
          Length = 1151

 Score = 31.1 bits (67), Expect = 1.2
 Identities = 16/55 (29%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
 Frame = -1

Query: 282 REVSVLFVQSHELGSSRHGELVSAGT--RRHGDRSCCLASHHQRDCHAVVVDLFQ 124
           +E S++F Q+   G    G+ + A     R+ +  CC+ASH  +    + +DL Q
Sbjct: 624 KEFSLIFSQAPNRGGKAPGDSLDAQRWWNRYVEAQCCIASHDYKGGLDIYLDLMQ 678


>06_03_0068 - 16177937-16178746
          Length = 269

 Score = 29.9 bits (64), Expect = 2.9
 Identities = 19/56 (33%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
 Frame = +3

Query: 381 AKEETAPIDEPLYDLGPHTSSIPVQXTYSQNFEFGGYIDQVEPTY-EALRGVDPQW 545
           A EE  PID PL DL PH +  P +      +    +ID +E  + +  R  D Q+
Sbjct: 188 ADEEGLPIDIPLPDLEPHHNPPPEEPKEGWTYNVLIHIDTLEDLHCKLARAYDYQY 243


>07_03_1483 +
           26881032-26882035,26882130-26882204,26882324-26882861,
           26883999-26884895,26885178-26885327,26885459-26885791,
           26886501-26886695,26887805-26887918
          Length = 1101

 Score = 29.5 bits (63), Expect = 3.8
 Identities = 12/22 (54%), Positives = 16/22 (72%), Gaps = 1/22 (4%)
 Frame = -2

Query: 143 LWLT-SSKALGLGIIICHPGCN 81
           LWL  +S ++G G IICH GC+
Sbjct: 336 LWLVQNSNSIGQGYIICHLGCH 357


>07_01_0444 +
           3357048-3357425,3357841-3357969,3358165-3358284,
           3358661-3358753,3358935-3359014,3359180-3359293,
           3359530-3359603,3359757-3359833,3360558-3360641,
           3360732-3360824,3360901-3361008,3361130-3361204,
           3361507-3361911
          Length = 609

 Score = 28.3 bits (60), Expect = 8.8
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = +3

Query: 24  REFLKILSFLSCCINKLIAIAARM 95
           R+FL+ + F++CC++K I    RM
Sbjct: 194 RKFLRCIFFMACCVHKAIDPRTRM 217


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,422,050
Number of Sequences: 37544
Number of extensions: 360231
Number of successful extensions: 871
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 851
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 871
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2530383840
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)