Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP06_F_L23
         (905 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0534 - 4635122-4635380,4635716-4635837                           35   0.077
01_06_1183 - 35176780-35177266,35179631-35181093                       29   3.8  
01_05_0655 - 23972488-23973152,23973193-23973241,23973883-239739...    29   6.7  
04_04_1538 + 34239913-34241274,34241468-34241578                       28   8.9  

>08_01_0534 - 4635122-4635380,4635716-4635837
          Length = 126

 Score = 35.1 bits (77), Expect = 0.077
 Identities = 21/53 (39%), Positives = 27/53 (50%)
 Frame = +2

Query: 56  GTRAAQRDCARXTQRATRPPQHVAGVAWARCDGRRRPATSLGLWTGRATDVTR 214
           G+ AAQ   AR  QR        +GV W  C GR    +++G WTG A + TR
Sbjct: 51  GSPAAQLSVAREWQRVEGDG---SGVKWKSCGGRTGSRSAVGRWTG-AVEATR 99


>01_06_1183 - 35176780-35177266,35179631-35181093
          Length = 649

 Score = 29.5 bits (63), Expect = 3.8
 Identities = 18/53 (33%), Positives = 24/53 (45%)
 Frame = -3

Query: 219 SRRVTSVARPVQRPSDVAGRRRPSHRAHATPATCWGGRVARWVXLAQSRCAAR 61
           SR V     PVQ+P D+A  +R +       A   GGR A W    ++ C  R
Sbjct: 554 SRTVPRCGNPVQKPVDIAAAKRLAEWMGGY-ACLDGGRFAAWQRPPKAGCVHR 605


>01_05_0655 -
           23972488-23973152,23973193-23973241,23973883-23973940,
           23974184-23974215,23975961-23976040,23976509-23977898
          Length = 757

 Score = 28.7 bits (61), Expect = 6.7
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = -1

Query: 152 RRTGPTRPQPHVGAVALHAGXPWH 81
           RR+GP+   PH G   +    PWH
Sbjct: 477 RRSGPSHAPPHAGPGTIAIVGPWH 500


>04_04_1538 + 34239913-34241274,34241468-34241578
          Length = 490

 Score = 28.3 bits (60), Expect = 8.9
 Identities = 13/26 (50%), Positives = 15/26 (57%), Gaps = 2/26 (7%)
 Frame = +1

Query: 91  YPACNATAPTCGWGRVGP--VRRPAA 162
           YP CNA A TC   +  P  +R PAA
Sbjct: 442 YPVCNAKARTCSKSKNSPYNIRTPAA 467


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,908,700
Number of Sequences: 37544
Number of extensions: 370961
Number of successful extensions: 1064
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1025
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1064
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2565528060
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)