Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP06_F_L22
         (910 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2G11.11c |prh1||ATP-dependent RNA helicase Prh1|Schizosaccha...    32   0.098
SPAC22F3.13 |tsc1||hamartin|Schizosaccharomyces pombe|chr 1|||Ma...    29   0.91 
SPBC13E7.07 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    28   2.1  
SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces po...    27   4.9  

>SPAC2G11.11c |prh1||ATP-dependent RNA helicase
           Prh1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 719

 Score = 32.3 bits (70), Expect = 0.098
 Identities = 17/46 (36%), Positives = 23/46 (50%)
 Frame = -3

Query: 485 SSPGTLNDFATFSLFSFIITLTRLLHPHVAFGALIGKHTTKAHTNS 348
           SSP   ++    S  S  IT T LLHP  ++  +IG  T   H +S
Sbjct: 627 SSPEVNSENLLLSFLSGYITNTALLHPDGSYRTIIGNQTISIHPSS 672


>SPAC22F3.13 |tsc1||hamartin|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 899

 Score = 29.1 bits (62), Expect = 0.91
 Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 3/47 (6%)
 Frame = +1

Query: 574 NVGKFNEDETL---VETKRQALLLLSTYEQQNQELSTHDANKHRDST 705
           N+GK + +  L   VE++RQ LLL +   +   EL   + +KHR  +
Sbjct: 574 NIGKLHREHILDMAVESERQKLLLTNKRYKAQIELLNSEIDKHRSES 620


>SPBC13E7.07 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 273

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 16/63 (25%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
 Frame = +1

Query: 535 KQIQNQNKIDXTLNVGKFNEDETLVETKRQALLLLSTYEQQNQELSTHDA--NKHRDSTT 708
           K++  + +      +GK  + +    TK+  L+   T  +++Q+L T DA  +K +DS+ 
Sbjct: 29  KKLATKPQKSKLTKLGKQKQRQKQKNTKKDTLVNRETPSKKSQKLETSDALKSKSKDSSK 88

Query: 709 NSP 717
             P
Sbjct: 89  KEP 91


>SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 897

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 11/17 (64%), Positives = 13/17 (76%), Gaps = 1/17 (5%)
 Frame = -2

Query: 441 FFHNNP-DATPPPTCSI 394
           F +NNP  ATPPP CS+
Sbjct: 370 FNNNNPATATPPPACSL 386


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,286,003
Number of Sequences: 5004
Number of extensions: 62791
Number of successful extensions: 159
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 158
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 159
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 460503700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)