Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP06_F_L19
         (895 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB17E12.11 |||N-oligosaccharyltransferase gamma subunit |Schi...    41   3e-04
SPBP8B7.27 |mug30||ubiquitin-protein ligase E3|Schizosaccharomyc...    28   2.1  
SPCC320.07c |mde7||RNA-binding protein Mde7|Schizosaccharomyces ...    27   2.7  
SPBC428.20c |alp6|SPBC902.01c|gamma tubulin complex Spc98/GCP3 s...    26   8.3  

>SPAPB17E12.11 |||N-oligosaccharyltransferase gamma subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 309

 Score = 40.7 bits (91), Expect = 3e-04
 Identities = 23/102 (22%), Positives = 44/102 (43%)
 Frame = +1

Query: 253 LTDITAKKSVIPLNINKFKEYVKSPPRDYSFVVMFTAMAPARRCAICQHVNDEYLLVANS 432
           L   T    VI +    F   V    +D++ V +F+A +    C +C+ +  E+  +ANS
Sbjct: 23  LNSKTDADGVIQITGRLFHRIVNGK-QDFTTVALFSADSSTMNCDVCRLIEPEFKALANS 81

Query: 433 FRFSAAYNNKLFFGIVDXDEGSXIFQMLRLNTAPVIMHFPAK 558
           ++     ++ + F   D  +   +FQ   + + P    F  K
Sbjct: 82  YKLKYGLDSGIRFTYADFGKNKNLFQDFSIESVPNFWIFKPK 123


>SPBP8B7.27 |mug30||ubiquitin-protein ligase E3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 807

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = +1

Query: 346 VVMFTAMAPARRCAICQHVNDEYLLVANS 432
           V+ + A A   RC++C  VND Y  ++ S
Sbjct: 89  VLRYPAQAMCFRCSLCMTVNDVYFCLSGS 117


>SPCC320.07c |mde7||RNA-binding protein Mde7|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 761

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 16/54 (29%), Positives = 24/54 (44%)
 Frame = +1

Query: 151 NMNFKVXXXXXXXXXYYEGAAQPRAKGIEEKVQQLTDITAKKSVIPLNINKFKE 312
           N N ++          Y    Q  +KG++    +LT+ TAK S +P NI    E
Sbjct: 389 NWNNRLLQPSSKEQAVYSFQTQKNSKGLQFTSNELTNPTAKYSQLPNNIANIGE 442


>SPBC428.20c |alp6|SPBC902.01c|gamma tubulin complex Spc98/GCP3
           subunit Alp6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 821

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 9/37 (24%), Positives = 23/37 (62%), Gaps = 5/37 (13%)
 Frame = -2

Query: 330 WRRLH-----IFLKLIYV*WNYRLLCCNISQLLHFLL 235
           WRR++     +F  L Y  + +  + C++++++HF++
Sbjct: 629 WRRVNLGERNVFRNLDYTKFEWHFVSCHLAEMIHFVI 665


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,756,494
Number of Sequences: 5004
Number of extensions: 46740
Number of successful extensions: 97
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 97
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 97
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 450492750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)