Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP06_F_L19
         (895 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L17337-3|AAA28222.1|  331|Caenorhabditis elegans Hypothetical pr...   120   1e-27
AY077615-1|AAL79359.1|  510|Caenorhabditis elegans KSR-2b protein.     29   4.5  
AY077614-1|AAL79358.1|  550|Caenorhabditis elegans KSR-2a protein.     29   4.5  
AL137227-5|CAB70240.2|  510|Caenorhabditis elegans Hypothetical ...    29   4.5  
AL137227-4|CAB70239.2|  550|Caenorhabditis elegans Hypothetical ...    29   4.5  

>L17337-3|AAA28222.1|  331|Caenorhabditis elegans Hypothetical
           protein ZK686.3 protein.
          Length = 331

 Score =  120 bits (289), Expect = 1e-27
 Identities = 54/122 (44%), Positives = 87/122 (71%), Gaps = 2/122 (1%)
 Frame = +1

Query: 199 YEGAAQPRAKGIEEKVQQLTDITAKKSVIPLNINKFKEYVKSPPRDYSFVVMFTAMAPAR 378
           YE A Q   + +E+KVQ L D+T+++S++  N++K+K  V+  PR+YS +VMFTA++P  
Sbjct: 6   YESAQQ---QTLEDKVQNLVDLTSRQSIVKFNMDKWKTLVRMQPRNYSMIVMFTALSPGV 62

Query: 379 RCAICQHVNDEYLLVANSFRFSAAYNN--KLFFGIVDXDEGSXIFQMLRLNTAPVIMHFP 552
           +C IC+   DE+++VANS R++++  +  K+FFGIVD ++   IFQ + LNTAP++ HF 
Sbjct: 63  QCPICKPAYDEFMIVANSHRYTSSEGDRRKVFFGIVDYEDAPQIFQQMNLNTAPILYHFG 122

Query: 553 AK 558
            K
Sbjct: 123 PK 124



 Score = 42.3 bits (95), Expect = 5e-04
 Identities = 23/97 (23%), Positives = 40/97 (41%)
 Frame = +3

Query: 567 KPADPMDFXKAGIHAEXIAXWIXDXTDVXIRXFRSPNYPXGVXFSXXLXPIXRGSFIXRK 746
           K  + MDF + G  A+ I  ++ D T+V +R  R PNY   V  +  +  +  G    ++
Sbjct: 129 KRPEQMDFQRQGFDADAIGRFVADQTEVHVRVIRPPNYTAPVVIALFV-ALLLGMLYMKR 187

Query: 747 SXPXFPXKKXXWAXXAGFLRXAXGXGAXXNQLKAPXF 857
           +   F   +  W      +      G   N ++ P F
Sbjct: 188 NSLDFLFNRTVWGFVCLAITFIFMSGQMWNHIRGPPF 224


>AY077615-1|AAL79359.1|  510|Caenorhabditis elegans KSR-2b protein.
          Length = 510

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 12/46 (26%), Positives = 24/46 (52%)
 Frame = +1

Query: 265 TAKKSVIPLNINKFKEYVKSPPRDYSFVVMFTAMAPARRCAICQHV 402
           T+  SV+P   ++      +PPR   +  M  + +  R+C +C+H+
Sbjct: 60  TSSSSVLPSTSSEPPPPASAPPRISIYHKMVPSKSKFRQCDVCEHI 105


>AY077614-1|AAL79358.1|  550|Caenorhabditis elegans KSR-2a protein.
          Length = 550

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 12/46 (26%), Positives = 24/46 (52%)
 Frame = +1

Query: 265 TAKKSVIPLNINKFKEYVKSPPRDYSFVVMFTAMAPARRCAICQHV 402
           T+  SV+P   ++      +PPR   +  M  + +  R+C +C+H+
Sbjct: 64  TSSSSVLPSTSSEPPPPASAPPRISIYHKMVPSKSKFRQCDVCEHI 109


>AL137227-5|CAB70240.2|  510|Caenorhabditis elegans Hypothetical
           protein F58D5.4b protein.
          Length = 510

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 12/46 (26%), Positives = 24/46 (52%)
 Frame = +1

Query: 265 TAKKSVIPLNINKFKEYVKSPPRDYSFVVMFTAMAPARRCAICQHV 402
           T+  SV+P   ++      +PPR   +  M  + +  R+C +C+H+
Sbjct: 60  TSSSSVLPSTSSEPPPPASAPPRISIYHKMVPSKSKFRQCDVCEHI 105


>AL137227-4|CAB70239.2|  550|Caenorhabditis elegans Hypothetical
           protein F58D5.4a protein.
          Length = 550

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 12/46 (26%), Positives = 24/46 (52%)
 Frame = +1

Query: 265 TAKKSVIPLNINKFKEYVKSPPRDYSFVVMFTAMAPARRCAICQHV 402
           T+  SV+P   ++      +PPR   +  M  + +  R+C +C+H+
Sbjct: 64  TSSSSVLPSTSSEPPPPASAPPRISIYHKMVPSKSKFRQCDVCEHI 109


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,350,705
Number of Sequences: 27780
Number of extensions: 265894
Number of successful extensions: 472
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 462
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 471
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2265843888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)