Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP06_F_L18
(930 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 31 1.6
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 31 1.6
AF000298-11|AAM97960.1| 518|Caenorhabditis elegans Prion-like-(... 29 3.6
AF000298-10|AAM97961.1| 539|Caenorhabditis elegans Prion-like-(... 29 3.6
AF000298-8|AAC48255.2| 524|Caenorhabditis elegans Prion-like-(q... 29 3.6
U58751-5|AAN84882.1| 781|Caenorhabditis elegans Wasp (actin cyt... 28 8.3
U58751-4|AAN84881.1| 607|Caenorhabditis elegans Wasp (actin cyt... 28 8.3
AL117204-20|CAB55136.2| 699|Caenorhabditis elegans Hypothetical... 28 8.3
AJ243905-1|CAB64866.1| 699|Caenorhabditis elegans SF1 protein p... 28 8.3
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical
protein C08B11.5 protein.
Length = 388
Score = 30.7 bits (66), Expect = 1.6
Identities = 17/60 (28%), Positives = 22/60 (36%)
Frame = +2
Query: 458 PPPPGXXXFXFGXXSLSPPXKPRXPGFXXGXXVFXPXXGGXRFPXXXGXXPXKKFLXXGP 637
PPPPG G + PP P G + P G R+P P ++ GP
Sbjct: 301 PPPPGRTPGPPGMPGMPPPPPPSRFGPPGMGGMPPPPPPGMRYPGGMPPPPPPRYPSAGP 360
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA
binding protein protein.
Length = 398
Score = 30.7 bits (66), Expect = 1.6
Identities = 17/60 (28%), Positives = 22/60 (36%)
Frame = +2
Query: 458 PPPPGXXXFXFGXXSLSPPXKPRXPGFXXGXXVFXPXXGGXRFPXXXGXXPXKKFLXXGP 637
PPPPG G + PP P G + P G R+P P ++ GP
Sbjct: 311 PPPPGRTPGPPGMPGMPPPPPPSRFGPPGMGGMPPPPPPGMRYPGGMPPPPPPRYPSAGP 370
>AF000298-11|AAM97960.1| 518|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform b protein.
Length = 518
Score = 29.5 bits (63), Expect = 3.6
Identities = 17/63 (26%), Positives = 19/63 (30%)
Frame = -3
Query: 601 PXXXGKXXXPXXGXENPXPXPKTXGPGFXXGGKGXGPKXKXPXPXGXGXFXXXXKPPXPP 422
P K P G +P P P P G P P P G + PP
Sbjct: 239 PPPPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPPRAGSPP 298
Query: 421 PXP 413
P P
Sbjct: 299 PPP 301
>AF000298-10|AAM97961.1| 539|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform c protein.
Length = 539
Score = 29.5 bits (63), Expect = 3.6
Identities = 17/63 (26%), Positives = 19/63 (30%)
Frame = -3
Query: 601 PXXXGKXXXPXXGXENPXPXPKTXGPGFXXGGKGXGPKXKXPXPXGXGXFXXXXKPPXPP 422
P K P G +P P P P G P P P G + PP
Sbjct: 260 PPPPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPPRAGSPP 319
Query: 421 PXP 413
P P
Sbjct: 320 PPP 322
>AF000298-8|AAC48255.2| 524|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform a protein.
Length = 524
Score = 29.5 bits (63), Expect = 3.6
Identities = 17/63 (26%), Positives = 19/63 (30%)
Frame = -3
Query: 601 PXXXGKXXXPXXGXENPXPXPKTXGPGFXXGGKGXGPKXKXPXPXGXGXFXXXXKPPXPP 422
P K P G +P P P P G P P P G + PP
Sbjct: 245 PPPPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPPRAGSPP 304
Query: 421 PXP 413
P P
Sbjct: 305 PPP 307
>U58751-5|AAN84882.1| 781|Caenorhabditis elegans Wasp (actin
cytoskeleton modulator)homolog protein 1, isoform b
protein.
Length = 781
Score = 28.3 bits (60), Expect = 8.3
Identities = 14/47 (29%), Positives = 14/47 (29%)
Frame = -3
Query: 553 PXPXPKTXGPGFXXGGKGXGPKXKXPXPXGXGXFXXXXKPPXPPPXP 413
P P P G P P P G PP PPP P
Sbjct: 611 PPPPPPPQSFGMAPISSAAPPPPPPPPPMGLPAVGAGAPPPPPPPPP 657
>U58751-4|AAN84881.1| 607|Caenorhabditis elegans Wasp (actin
cytoskeleton modulator)homolog protein 1, isoform a
protein.
Length = 607
Score = 28.3 bits (60), Expect = 8.3
Identities = 14/47 (29%), Positives = 14/47 (29%)
Frame = -3
Query: 553 PXPXPKTXGPGFXXGGKGXGPKXKXPXPXGXGXFXXXXKPPXPPPXP 413
P P P G P P P G PP PPP P
Sbjct: 437 PPPPPPPQSFGMAPISSAAPPPPPPPPPMGLPAVGAGAPPPPPPPPP 483
>AL117204-20|CAB55136.2| 699|Caenorhabditis elegans Hypothetical
protein Y116A8C.32 protein.
Length = 699
Score = 28.3 bits (60), Expect = 8.3
Identities = 14/37 (37%), Positives = 15/37 (40%)
Frame = -3
Query: 523 GFXXGGKGXGPKXKXPXPXGXGXFXXXXKPPXPPPXP 413
G+ G G P P G G F PP PPP P
Sbjct: 649 GWYGSGGGSSMPMPVPPPGGLGGFMPP--PPPPPPMP 683
>AJ243905-1|CAB64866.1| 699|Caenorhabditis elegans SF1 protein
protein.
Length = 699
Score = 28.3 bits (60), Expect = 8.3
Identities = 14/37 (37%), Positives = 15/37 (40%)
Frame = -3
Query: 523 GFXXGGKGXGPKXKXPXPXGXGXFXXXXKPPXPPPXP 413
G+ G G P P G G F PP PPP P
Sbjct: 649 GWYGSGGGSSMPMPVPPPGGLGGFMPP--PPPPPPMP 683
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,080,920
Number of Sequences: 27780
Number of extensions: 160545
Number of successful extensions: 494
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 297
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 468
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2391724104
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -