Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP06_F_L15
(938 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF000195-3|AAC24268.1| 689|Caenorhabditis elegans Hmg protein 3... 33 0.22
U10401-6|AAA19061.1| 697|Caenorhabditis elegans Hmg protein 4 p... 31 0.90
Z83119-2|CAB05579.2| 608|Caenorhabditis elegans Hypothetical pr... 30 2.1
AF040645-9|AAB94972.2| 197|Caenorhabditis elegans Hypothetical ... 30 2.1
Z71258-13|CAN86573.1| 582|Caenorhabditis elegans Hypothetical p... 30 2.7
Z71258-6|CAA95779.1| 636|Caenorhabditis elegans Hypothetical pr... 30 2.7
AC006665-2|AAF39904.1| 341|Caenorhabditis elegans Hypothetical ... 30 2.7
U41036-1|AAA82384.1| 315|Caenorhabditis elegans Hypothetical pr... 29 4.8
AL034393-22|CAD36499.1| 655|Caenorhabditis elegans Hypothetical... 29 6.3
AL034393-21|CAA22320.2| 681|Caenorhabditis elegans Hypothetical... 29 6.3
AL032634-3|CAE45092.1| 412|Caenorhabditis elegans Hypothetical ... 29 6.3
AF497833-1|AAM18111.1| 655|Caenorhabditis elegans putative Na-H... 29 6.3
AF497832-1|AAM18110.1| 681|Caenorhabditis elegans putative Na-H... 29 6.3
Z82076-6|CAH10809.1| 450|Caenorhabditis elegans Hypothetical pr... 28 8.4
Z82076-4|CAB04937.2| 438|Caenorhabditis elegans Hypothetical pr... 28 8.4
Z77652-9|CAB01116.1| 220|Caenorhabditis elegans Hypothetical pr... 28 8.4
Z49128-8|CAA88960.2| 989|Caenorhabditis elegans Hypothetical pr... 28 8.4
U42438-7|AAN84875.1| 201|Caenorhabditis elegans Hypothetical pr... 28 8.4
U42438-6|AAM75370.1| 314|Caenorhabditis elegans Hypothetical pr... 28 8.4
U42438-5|AAM75369.1| 581|Caenorhabditis elegans Hypothetical pr... 28 8.4
U42438-4|AAM75371.1| 617|Caenorhabditis elegans Hypothetical pr... 28 8.4
AL132902-10|CAB82002.1| 286|Caenorhabditis elegans Hypothetical... 28 8.4
AL021171-6|CAA15960.2| 989|Caenorhabditis elegans Hypothetical ... 28 8.4
>AF000195-3|AAC24268.1| 689|Caenorhabditis elegans Hmg protein 3
protein.
Length = 689
Score = 33.5 bits (73), Expect = 0.22
Identities = 22/65 (33%), Positives = 35/65 (53%), Gaps = 5/65 (7%)
Frame = +3
Query: 174 KSLKLNEEDSDGS-GQGAEPEEFQDSGED----WTPDADSNEPASRTGRKRVSKAPVNNT 338
K +K + D D S G G+EP++ DSG + T ++D +E + +K+ SK N
Sbjct: 479 KDMKKQKNDKDSSEGSGSEPDDEYDSGSEKDASGTGESDPDE-ENIEPKKKESKEKKNKR 537
Query: 339 KKKRK 353
+KK K
Sbjct: 538 EKKEK 542
>U10401-6|AAA19061.1| 697|Caenorhabditis elegans Hmg protein 4
protein.
Length = 697
Score = 31.5 bits (68), Expect = 0.90
Identities = 22/64 (34%), Positives = 31/64 (48%), Gaps = 4/64 (6%)
Frame = +3
Query: 174 KSLKLNEEDSDGS-GQGAEPEEFQDSG-EDWTPDADSNEPASR--TGRKRVSKAPVNNTK 341
K +K +ED + S G G+EP++ DSG E + +EP S KR P +
Sbjct: 475 KDIKKKKEDKESSEGTGSEPDDEYDSGSEQDSSGTGESEPDSEQDVPSKRRKGEPKEKRE 534
Query: 342 KKRK 353
KK K
Sbjct: 535 KKEK 538
>Z83119-2|CAB05579.2| 608|Caenorhabditis elegans Hypothetical
protein R05H10.2 protein.
Length = 608
Score = 30.3 bits (65), Expect = 2.1
Identities = 15/35 (42%), Positives = 21/35 (60%)
Frame = +3
Query: 192 EEDSDGSGQGAEPEEFQDSGEDWTPDADSNEPASR 296
EE+S+GS G+E E ++ ED D D EPA +
Sbjct: 214 EEESEGSEDGSEAFEASEASED---DEDDEEPAKK 245
>AF040645-9|AAB94972.2| 197|Caenorhabditis elegans Hypothetical
protein F52C6.3 protein.
Length = 197
Score = 30.3 bits (65), Expect = 2.1
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = +1
Query: 553 WDGXTVFPNXDXLDLLENWXATLFSXNFXPLDSNWE 660
W+ + PN L LLENW LFS + D+++E
Sbjct: 132 WEKLRILPNTQKL-LLENWDLDLFSDHSTLFDNSFE 166
>Z71258-13|CAN86573.1| 582|Caenorhabditis elegans Hypothetical
protein C01H6.7b protein.
Length = 582
Score = 29.9 bits (64), Expect = 2.7
Identities = 28/106 (26%), Positives = 48/106 (45%), Gaps = 9/106 (8%)
Frame = +3
Query: 63 EGEAR--ILASPKVKSD*RGSVSLSYFFRTIPIKKMRKRKSLKLNE--EDSDGSGQGAEP 230
EGE+R ++ P + RG + S +P R K +K E E+ D ++P
Sbjct: 3 EGESRRSMVGIPPTRRA-RGGNTPSTATPVVPRTSARAAKRVKKEEPEEEEDYKNNNSDP 61
Query: 231 E-----EFQDSGEDWTPDADSNEPASRTGRKRVSKAPVNNTKKKRK 353
E E ++SG++ T + GRK+ +AP+ + K+K
Sbjct: 62 EKSEEDESEESGDEMTTPSRKTPGGGAGGRKK-KRAPLTDYHLKKK 106
>Z71258-6|CAA95779.1| 636|Caenorhabditis elegans Hypothetical
protein C01H6.7 protein.
Length = 636
Score = 29.9 bits (64), Expect = 2.7
Identities = 28/106 (26%), Positives = 48/106 (45%), Gaps = 9/106 (8%)
Frame = +3
Query: 63 EGEAR--ILASPKVKSD*RGSVSLSYFFRTIPIKKMRKRKSLKLNE--EDSDGSGQGAEP 230
EGE+R ++ P + RG + S +P R K +K E E+ D ++P
Sbjct: 3 EGESRRSMVGIPPTRRA-RGGNTPSTATPVVPRTSARAAKRVKKEEPEEEEDYKNNNSDP 61
Query: 231 E-----EFQDSGEDWTPDADSNEPASRTGRKRVSKAPVNNTKKKRK 353
E E ++SG++ T + GRK+ +AP+ + K+K
Sbjct: 62 EKSEEDESEESGDEMTTPSRKTPGGGAGGRKK-KRAPLTDYHLKKK 106
>AC006665-2|AAF39904.1| 341|Caenorhabditis elegans Hypothetical
protein H27M09.5 protein.
Length = 341
Score = 29.9 bits (64), Expect = 2.7
Identities = 16/65 (24%), Positives = 30/65 (46%)
Frame = +3
Query: 156 KKMRKRKSLKLNEEDSDGSGQGAEPEEFQDSGEDWTPDADSNEPASRTGRKRVSKAPVNN 335
KK K K K ++ + G + E E +++ G D +D E + + ++ S +
Sbjct: 48 KKSMKSKKSKKSKREKKGDNED-EKENYKEDGNDHNNGSDRKEGSKKKKSRQKSMKSSRS 106
Query: 336 TKKKR 350
+KKR
Sbjct: 107 KRKKR 111
>U41036-1|AAA82384.1| 315|Caenorhabditis elegans Hypothetical
protein T14E8.2 protein.
Length = 315
Score = 29.1 bits (62), Expect = 4.8
Identities = 11/60 (18%), Positives = 30/60 (50%)
Frame = +3
Query: 171 RKSLKLNEEDSDGSGQGAEPEEFQDSGEDWTPDADSNEPASRTGRKRVSKAPVNNTKKKR 350
+ + +NE+D D + E + ++ ++ D+++ R+R +A ++K++R
Sbjct: 243 KSKMYMNEKDDDDVNKSVEESDEEEENQESEEQEDNDKAEKEEERRRQEEAARQHSKRRR 302
>AL034393-22|CAD36499.1| 655|Caenorhabditis elegans Hypothetical
protein Y18D10A.6b protein.
Length = 655
Score = 28.7 bits (61), Expect = 6.3
Identities = 17/63 (26%), Positives = 30/63 (47%), Gaps = 3/63 (4%)
Frame = +3
Query: 126 LSYFFRTIPIKKMRKRKSLKLNEEDSDGSG--QGAEPEEFQDSG-EDWTPDADSNEPASR 296
+S+ R P ++ RKR+ N+E + S ++ +E G +DW P + + S
Sbjct: 491 ISFINRCYPNERQRKRRRTPRNKESTGNSSALMMSKTQEMSFFGSDDWGPKKSALDATSS 550
Query: 297 TGR 305
GR
Sbjct: 551 AGR 553
>AL034393-21|CAA22320.2| 681|Caenorhabditis elegans Hypothetical
protein Y18D10A.6a protein.
Length = 681
Score = 28.7 bits (61), Expect = 6.3
Identities = 17/63 (26%), Positives = 30/63 (47%), Gaps = 3/63 (4%)
Frame = +3
Query: 126 LSYFFRTIPIKKMRKRKSLKLNEEDSDGSG--QGAEPEEFQDSG-EDWTPDADSNEPASR 296
+S+ R P ++ RKR+ N+E + S ++ +E G +DW P + + S
Sbjct: 517 ISFINRCYPNERQRKRRRTPRNKESTGNSSALMMSKTQEMSFFGSDDWGPKKSALDATSS 576
Query: 297 TGR 305
GR
Sbjct: 577 AGR 579
>AL032634-3|CAE45092.1| 412|Caenorhabditis elegans Hypothetical
protein Y39G8C.4 protein.
Length = 412
Score = 28.7 bits (61), Expect = 6.3
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = +3
Query: 189 NEEDSDGSGQGAEPEEFQDSGE 254
+EED DGSG G E+ +D E
Sbjct: 65 DEEDDDGSGSGGPEEDVEDPNE 86
>AF497833-1|AAM18111.1| 655|Caenorhabditis elegans putative Na-H
exchanger isoform 8b protein.
Length = 655
Score = 28.7 bits (61), Expect = 6.3
Identities = 17/63 (26%), Positives = 30/63 (47%), Gaps = 3/63 (4%)
Frame = +3
Query: 126 LSYFFRTIPIKKMRKRKSLKLNEEDSDGSG--QGAEPEEFQDSG-EDWTPDADSNEPASR 296
+S+ R P ++ RKR+ N+E + S ++ +E G +DW P + + S
Sbjct: 491 ISFINRCYPNERQRKRRRTPRNKESTGNSSALMMSKTQEMSFFGSDDWGPKKSALDATSS 550
Query: 297 TGR 305
GR
Sbjct: 551 AGR 553
>AF497832-1|AAM18110.1| 681|Caenorhabditis elegans putative Na-H
exchanger isoform 8a protein.
Length = 681
Score = 28.7 bits (61), Expect = 6.3
Identities = 17/63 (26%), Positives = 30/63 (47%), Gaps = 3/63 (4%)
Frame = +3
Query: 126 LSYFFRTIPIKKMRKRKSLKLNEEDSDGSG--QGAEPEEFQDSG-EDWTPDADSNEPASR 296
+S+ R P ++ RKR+ N+E + S ++ +E G +DW P + + S
Sbjct: 517 ISFINRCYPNERQRKRRRTPRNKESTGNSSALMMSKTQEMSFFGSDDWGPKKSALDATSS 576
Query: 297 TGR 305
GR
Sbjct: 577 AGR 579
>Z82076-6|CAH10809.1| 450|Caenorhabditis elegans Hypothetical
protein W07G1.5b protein.
Length = 450
Score = 28.3 bits (60), Expect = 8.4
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = +3
Query: 192 EEDSDGSGQGAEPEEFQDSGEDWTPDADSNEPA 290
EE+ +G+G + EE +D ED D EP+
Sbjct: 360 EEEDEGNGDEDDDEEVEDDEEDAGSDEAEEEPS 392
>Z82076-4|CAB04937.2| 438|Caenorhabditis elegans Hypothetical
protein W07G1.5a protein.
Length = 438
Score = 28.3 bits (60), Expect = 8.4
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = +3
Query: 192 EEDSDGSGQGAEPEEFQDSGEDWTPDADSNEPA 290
EE+ +G+G + EE +D ED D EP+
Sbjct: 348 EEEDEGNGDEDDDEEVEDDEEDAGSDEAEEEPS 380
>Z77652-9|CAB01116.1| 220|Caenorhabditis elegans Hypothetical
protein C06B3.6 protein.
Length = 220
Score = 28.3 bits (60), Expect = 8.4
Identities = 23/110 (20%), Positives = 47/110 (42%), Gaps = 6/110 (5%)
Frame = +3
Query: 42 RFFDFFIEGEARILASPKVKSD*RGSVSLSYFFRTIPIKKMRKRKSLKLNEEDSDGSGQG 221
R +F+I+ A K++ + S + F + + + K+K ++N+E D S +G
Sbjct: 12 RLMNFYIKKAPTYSAIVKIEHFENDAPSEAKDFEPLVVYSLNKKKRWEINQEFLDSSSEG 71
Query: 222 AEPE------EFQDSGEDWTPDADSNEPASRTGRKRVSKAPVNNTKKKRK 353
+ + E D W + + K V+ + ++N KK+ K
Sbjct: 72 DDSKSVIIDREIPDLYFAWWSLGNVHSHDCVNHSKPVNSSQIDNAKKEEK 121
>Z49128-8|CAA88960.2| 989|Caenorhabditis elegans Hypothetical
protein M03C11.8 protein.
Length = 989
Score = 28.3 bits (60), Expect = 8.4
Identities = 18/56 (32%), Positives = 33/56 (58%), Gaps = 2/56 (3%)
Frame = +3
Query: 189 NEEDSD-GSGQGAEPEEFQDSGEDWTPDADSNEPASRTGRK-RVSKAPVNNTKKKR 350
+EE S+ GSG+G+E EE + SG+ D+++ E + G+ + + A +KK+
Sbjct: 197 DEEISEKGSGKGSEKEESEGSGK----DSETEEVTMKQGQSLKAAMAKAQKEQKKK 248
>U42438-7|AAN84875.1| 201|Caenorhabditis elegans Hypothetical
protein C09G4.2d protein.
Length = 201
Score = 28.3 bits (60), Expect = 8.4
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = +3
Query: 591 GPXGKLVGHXFFXKFXPIGFQLGRXFPPIVP 683
G G++ H +F F +GF+ R PP +P
Sbjct: 138 GDIGEIRHHIWFDNFDFVGFRAHRIRPPFIP 168
>U42438-6|AAM75370.1| 314|Caenorhabditis elegans Hypothetical
protein C09G4.2b protein.
Length = 314
Score = 28.3 bits (60), Expect = 8.4
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = +3
Query: 591 GPXGKLVGHXFFXKFXPIGFQLGRXFPPIVP 683
G G++ H +F F +GF+ R PP +P
Sbjct: 251 GDIGEIRHHIWFDNFDFVGFRAHRIRPPFIP 281
>U42438-5|AAM75369.1| 581|Caenorhabditis elegans Hypothetical
protein C09G4.2a protein.
Length = 581
Score = 28.3 bits (60), Expect = 8.4
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = +3
Query: 591 GPXGKLVGHXFFXKFXPIGFQLGRXFPPIVP 683
G G++ H +F F +GF+ R PP +P
Sbjct: 518 GDIGEIRHHIWFDNFDFVGFRAHRIRPPFIP 548
>U42438-4|AAM75371.1| 617|Caenorhabditis elegans Hypothetical
protein C09G4.2c protein.
Length = 617
Score = 28.3 bits (60), Expect = 8.4
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = +3
Query: 591 GPXGKLVGHXFFXKFXPIGFQLGRXFPPIVP 683
G G++ H +F F +GF+ R PP +P
Sbjct: 554 GDIGEIRHHIWFDNFDFVGFRAHRIRPPFIP 584
>AL132902-10|CAB82002.1| 286|Caenorhabditis elegans Hypothetical
protein Y71A12B.11 protein.
Length = 286
Score = 28.3 bits (60), Expect = 8.4
Identities = 14/49 (28%), Positives = 23/49 (46%)
Frame = +3
Query: 192 EEDSDGSGQGAEPEEFQDSGEDWTPDADSNEPASRTGRKRVSKAPVNNT 338
E +SD + + E EE +D D + D+D +E G + A N+
Sbjct: 204 EPESDAADESVEEEEEEDEDSDDSDDSDDSEEEEAEGSTAQAPAEKANS 252
>AL021171-6|CAA15960.2| 989|Caenorhabditis elegans Hypothetical
protein M03C11.8 protein.
Length = 989
Score = 28.3 bits (60), Expect = 8.4
Identities = 18/56 (32%), Positives = 33/56 (58%), Gaps = 2/56 (3%)
Frame = +3
Query: 189 NEEDSD-GSGQGAEPEEFQDSGEDWTPDADSNEPASRTGRK-RVSKAPVNNTKKKR 350
+EE S+ GSG+G+E EE + SG+ D+++ E + G+ + + A +KK+
Sbjct: 197 DEEISEKGSGKGSEKEESEGSGK----DSETEEVTMKQGQSLKAAMAKAQKEQKKK 248
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,202,789
Number of Sequences: 27780
Number of extensions: 314329
Number of successful extensions: 988
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 918
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 985
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2423194158
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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