Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP06_F_L14
         (903 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC18.12c |||rRNA processing protein|Schizosaccharomyces pombe|...    33   0.056
SPBC28E12.01c |apc13|SPBC9B6.12c|anaphase-promoting complex subu...    26   6.4  
SPAC4H3.12c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    26   8.4  
SPBC18H10.16 |||amino acid permease, unknown 9|Schizosaccharomyc...    26   8.4  
SPBC26H8.10 |dis3|rrp44|3'-5' exoribonuclease subunit Dis3 |Schi...    26   8.4  
SPBC31F10.11c |cwf4|syf3|complexed with Cdc5 protein Cwf4 |Schiz...    26   8.4  
SPAC4G9.04c |||cleavage and polyadenylation specificity factor |...    26   8.4  

>SPCC18.12c |||rRNA processing protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 260

 Score = 33.1 bits (72), Expect = 0.056
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = +3

Query: 192 MKITRYKKVQKYLKFYYNNYGFHQPYQVLIDGTF 293
           M+  R K  +K +  Y   +GF +PYQVL+D  F
Sbjct: 1   MRQKRAKNYRKLMHTYQLLFGFREPYQVLVDADF 34


>SPBC28E12.01c |apc13|SPBC9B6.12c|anaphase-promoting complex subunit
           Apc13|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 135

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = +1

Query: 364 DWRAEQLPHEDIQVPLDELPDPEAD 438
           DW  ++LP +D++V ++ LP    D
Sbjct: 21  DWLKDRLPVDDVEVRVEHLPPVTED 45


>SPAC4H3.12c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 101

 Score = 25.8 bits (54), Expect = 8.4
 Identities = 17/61 (27%), Positives = 27/61 (44%), Gaps = 3/61 (4%)
 Frame = -1

Query: 297 NKMYHR*GLGTADENH--NCCNKTLDISVLFCNVLFS-FFITNLAFVNSLFFRFLL*CSI 127
           N+ Y        + N   +C N  L   +LF N +   F++  +A  N  + RFL  C +
Sbjct: 5   NRNYSHKNFNVTNNNFQVSCFNPILLKIILFLNTIVCIFYVYKIALCNE-YIRFLAKCFL 63

Query: 126 Y 124
           Y
Sbjct: 64  Y 64


>SPBC18H10.16 |||amino acid permease, unknown 9|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1050

 Score = 25.8 bits (54), Expect = 8.4
 Identities = 9/27 (33%), Positives = 17/27 (62%)
 Frame = +2

Query: 176 RFVIKNENNTLQKSTEISKVLLQQLWF 256
           R+++KNE+    KS+E+  +L    W+
Sbjct: 830 RYIVKNEHVRPSKSSELENLLKDDSWW 856


>SPBC26H8.10 |dis3|rrp44|3'-5' exoribonuclease subunit Dis3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 970

 Score = 25.8 bits (54), Expect = 8.4
 Identities = 12/35 (34%), Positives = 21/35 (60%)
 Frame = +1

Query: 283 MVHFVSLHSNMDSKCRRNGRLIDIVDEDWRAEQLP 387
           + HFV  +++MDS+    G  + +VD+  R + LP
Sbjct: 538 VTHFVKPNTSMDSEAASRGTTVYLVDK--RIDMLP 570


>SPBC31F10.11c |cwf4|syf3|complexed with Cdc5 protein Cwf4
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 674

 Score = 25.8 bits (54), Expect = 8.4
 Identities = 18/67 (26%), Positives = 30/67 (44%), Gaps = 1/67 (1%)
 Frame = +1

Query: 292 FVSLHSNMDSKCRRNGRLIDIVDEDWRAEQLPHEDIQVPLDEL-PDPEADSADSHLTLKE 468
           F ++H   D++   +  +  +V +  R E    E+    LD L PD   D  D    + E
Sbjct: 602 FEAMHGTEDTRKHVSSLMPQVVKKRRRLEDGSFEEY---LDYLFPDTATDQGDKMRKMLE 658

Query: 469 QSMRWQE 489
            S +W+E
Sbjct: 659 LSRKWKE 665


>SPAC4G9.04c |||cleavage and polyadenylation specificity factor
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 638

 Score = 25.8 bits (54), Expect = 8.4
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = -1

Query: 573 PGX*VLGNLLSDVNMLLVLITARWFR 496
           PG   L +LLSDVN ++V   AR+ +
Sbjct: 199 PGFITLDSLLSDVNRMIVTEQARFIK 224


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,938,801
Number of Sequences: 5004
Number of extensions: 52439
Number of successful extensions: 130
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 130
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 456499320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)