Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP06_F_L14
         (903 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U10402-1|AAK67218.1|  232|Caenorhabditis elegans Hypothetical pr...    50   3e-06
AF098995-12|AAC67485.1|  406|Caenorhabditis elegans Hypothetical...    29   3.4  
Z71262-10|CAA95816.4|  436|Caenorhabditis elegans Hypothetical p...    29   6.0  
X83887-1|CAA58764.1|  498|Caenorhabditis elegans alpha-1 subunit...    29   6.0  
AY523511-1|AAR98633.1|  498|Caenorhabditis elegans acetylcholine...    29   6.0  
AY037801-1|AAK94766.1|  436|Caenorhabditis elegans GLY-19 protein.     29   6.0  
AF022973-7|AAN84815.1|  480|Caenorhabditis elegans Acetylcholine...    29   6.0  
AF022973-6|AAC25796.1|  498|Caenorhabditis elegans Acetylcholine...    29   6.0  
Z93382-7|CAB07618.1|  214|Caenorhabditis elegans Hypothetical pr...    28   7.9  

>U10402-1|AAK67218.1|  232|Caenorhabditis elegans Hypothetical
           protein C34E10.10 protein.
          Length = 232

 Score = 49.6 bits (113), Expect = 3e-06
 Identities = 21/40 (52%), Positives = 27/40 (67%)
 Frame = +3

Query: 192 MKITRYKKVQKYLKFYYNNYGFHQPYQVLIDGTFCFAAFK 311
           MK+ R K+  + L FY  NY F  PY+VL+DGTFC AA +
Sbjct: 1   MKVKRLKRANRLLTFYKYNYKFVAPYRVLVDGTFCNAALQ 40



 Score = 29.1 bits (62), Expect = 4.5
 Identities = 16/48 (33%), Positives = 21/48 (43%)
 Frame = +3

Query: 570 QAKLLTTRCXIIEXEXLAKKXPGALPILKQFGYS*MWPQEPVAGSKCI 713
           +  L+TT C + E E       GA  I KQF  +      P A S C+
Sbjct: 56  ETHLMTTNCVLKELEKFGPLLYGAFVIAKQFEIAECTHSTPRAASDCL 103


>AF098995-12|AAC67485.1|  406|Caenorhabditis elegans Hypothetical
           protein F58E1.12 protein.
          Length = 406

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 15/56 (26%), Positives = 26/56 (46%)
 Frame = +1

Query: 346 IDIVDEDWRAEQLPHEDIQVPLDELPDPEADSADSHLTLKEQSMRWQENFPEPASS 513
           + ++ +D RAEQ     +  P+D+  +      +  +   EQ  RW+ NF   A S
Sbjct: 351 LGVIKKDGRAEQCEESSVTFPIDKSAEIYIYIQEIEIGGVEQRNRWELNFTVRAKS 406


>Z71262-10|CAA95816.4|  436|Caenorhabditis elegans Hypothetical
           protein F22D6.12 protein.
          Length = 436

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 12/23 (52%), Positives = 17/23 (73%)
 Frame = -2

Query: 191 FLLRTSLL*IVFFLGFYFSVQSM 123
           F  +TSL+  +FFL  YFSV+S+
Sbjct: 4   FKFKTSLIIAIFFLFIYFSVESL 26


>X83887-1|CAA58764.1|  498|Caenorhabditis elegans alpha-1 subunit of
           nicotinic acetylcholinereceptor protein.
          Length = 498

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = +1

Query: 40  RFLDVH*NNTIVKVNALIKFTLQDHNLIID 129
           + +DV   N +V VNA + +T  D+NL+ D
Sbjct: 58  QIIDVDEKNQVVYVNAWLDYTWNDYNLVWD 87


>AY523511-1|AAR98633.1|  498|Caenorhabditis elegans acetylcholine
           receptor (57.1 kD)alternative variant 1 protein.
          Length = 498

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = +1

Query: 40  RFLDVH*NNTIVKVNALIKFTLQDHNLIID 129
           + +DV   N +V VNA + +T  D+NL+ D
Sbjct: 58  QIIDVDEKNQVVYVNAWLDYTWNDYNLVWD 87


>AY037801-1|AAK94766.1|  436|Caenorhabditis elegans GLY-19 protein.
          Length = 436

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 12/23 (52%), Positives = 17/23 (73%)
 Frame = -2

Query: 191 FLLRTSLL*IVFFLGFYFSVQSM 123
           F  +TSL+  +FFL  YFSV+S+
Sbjct: 4   FKFKTSLIIAIFFLFIYFSVESL 26


>AF022973-7|AAN84815.1|  480|Caenorhabditis elegans Acetylcholine
           receptor protein16, isoform b protein.
          Length = 480

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = +1

Query: 40  RFLDVH*NNTIVKVNALIKFTLQDHNLIID 129
           + +DV   N +V VNA + +T  D+NL+ D
Sbjct: 58  QIIDVDEKNQVVYVNAWLDYTWNDYNLVWD 87


>AF022973-6|AAC25796.1|  498|Caenorhabditis elegans Acetylcholine
           receptor protein16, isoform a protein.
          Length = 498

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = +1

Query: 40  RFLDVH*NNTIVKVNALIKFTLQDHNLIID 129
           + +DV   N +V VNA + +T  D+NL+ D
Sbjct: 58  QIIDVDEKNQVVYVNAWLDYTWNDYNLVWD 87


>Z93382-7|CAB07618.1|  214|Caenorhabditis elegans Hypothetical
           protein F45G2.9 protein.
          Length = 214

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
 Frame = +1

Query: 376 EQLPHEDIQVPLDEL-PDPEADSADSHLTLKE 468
           E+L H  + V L ++ P+P  D+A  HL L E
Sbjct: 112 EKLAHRQVDVVLSDMAPNPTGDNATDHLRLIE 143


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,447,548
Number of Sequences: 27780
Number of extensions: 307268
Number of successful extensions: 836
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 792
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 836
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2297313942
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)