Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP06_F_L13
         (894 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC20G4.02c |fus1||formin Fus1|Schizosaccharomyces pombe|chr 1|...    31   0.17 
SPAC9E9.08 |rad26||ATRIP|Schizosaccharomyces pombe|chr 1|||Manual      29   0.67 
SPBC530.06c |||translation initiation factor eIF3 alpha subunit ...    29   0.89 
SPBC1105.01 |rrp12|SPBPB7E8.03|rRNA processing protein Rrp12|Sch...    29   1.2  
SPAC1805.01c |ppk6|SPAPJ736.02c|serine/threonine protein kinase ...    28   2.1  
SPAC2G11.02 |urb2||ribosome biogenesis protein Urb2 |Schizosacch...    27   2.7  
SPBC17G9.03c |||lysine-tRNA ligase|Schizosaccharomyces pombe|chr...    27   2.7  
SPAC17A5.01 |pex6||peroxin-6 |Schizosaccharomyces pombe|chr 1|||...    27   4.8  
SPAC56F8.06c |alg10||dolichyl-phosphate-glucose-glycolipid alpha...    26   6.3  
SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase Mok11|S...    26   8.3  
SPAC1142.01 ||SPAC17G6.18|DUF654 family protein|Schizosaccharomy...    26   8.3  
SPBC20F10.03 |||conserved eukaryotic protein|Schizosaccharomyces...    26   8.3  

>SPAC20G4.02c |fus1||formin Fus1|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1372

 Score = 31.5 bits (68), Expect = 0.17
 Identities = 20/60 (33%), Positives = 29/60 (48%)
 Frame = +1

Query: 607  NRIILEHIKEASGRILLEKRQAQDAMELLKLYHQSVSNGPEDVSSPKQERVKSTQLNIWS 786
            N IILE+ K ++    +EK +    + L  L     SN  E+  S K E V +T  N+ S
Sbjct: 1246 NEIILEYKKASTVNQKMEKEEELAFLRLQALKASVKSNNAENSGSSKNEEVSATMENLIS 1305


>SPAC9E9.08 |rad26||ATRIP|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 614

 Score = 29.5 bits (63), Expect = 0.67
 Identities = 13/35 (37%), Positives = 21/35 (60%)
 Frame = +1

Query: 622 EHIKEASGRILLEKRQAQDAMELLKLYHQSVSNGP 726
           + I+ A  + L  +R+AQDA+E +K   + V N P
Sbjct: 133 KEIEYAKTKSLFHEREAQDAIETMKKMKRDVKNSP 167


>SPBC530.06c |||translation initiation factor eIF3 alpha subunit
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1173

 Score = 29.1 bits (62), Expect = 0.89
 Identities = 16/47 (34%), Positives = 30/47 (63%), Gaps = 1/47 (2%)
 Frame = +1

Query: 355  STLDPDTSL-MILHGNEKWVPNMPKCQVSLDQTDDIALGDKEQVASL 492
            +T++  T+L ++LHG+EK++ +    Q+++D +D I  G     ASL
Sbjct: 1066 NTINSFTNLSLMLHGSEKFIQSQKCLQIAVDLSDKI-FGKTTPTASL 1111


>SPBC1105.01 |rrp12|SPBPB7E8.03|rRNA processing protein
           Rrp12|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1001

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = +2

Query: 140 FYVQYINKKTWKTTLTNHIK 199
           F ++++NKK W T L+N IK
Sbjct: 348 FTMKFVNKKNWATVLSNGIK 367


>SPAC1805.01c |ppk6|SPAPJ736.02c|serine/threonine protein kinase
           Ppk6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 775

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 14/45 (31%), Positives = 23/45 (51%)
 Frame = +1

Query: 658 EKRQAQDAMELLKLYHQSVSNGPEDVSSPKQERVKSTQLNIWSAH 792
           EKR++   +  + + H+  SN P   SS       +T  +IWSA+
Sbjct: 128 EKRRSLSDISYVPIPHKEHSNWPVHCSSQAIVTTSNTTFSIWSAN 172


>SPAC2G11.02 |urb2||ribosome biogenesis protein Urb2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1318

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 15/50 (30%), Positives = 23/50 (46%)
 Frame = +2

Query: 101 LFLLCNRNK*TIFFYVQYINKKTWKTTLTNHIKFAMLIAKRRKELSRCRL 250
           L LLC   K   +F   ++N    K  LT H    +L+ K+   ++ C L
Sbjct: 199 LALLCKTQKGDPYF--SFLNAVLMKCVLTQHTLDVLLLTKKDSSMTLCSL 246


>SPBC17G9.03c |||lysine-tRNA ligase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 591

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 18/63 (28%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
 Frame = +1

Query: 592 VTDRDNRIILEHIK-EASGRILLEKRQAQDAMELLKLYHQSVSNGPEDVSSPKQERVKST 768
           VT     ++L+ +  E   +  L+KR+ Q A EL K   Q+       V++PK    K  
Sbjct: 9   VTQAVKALVLDPVTGEQVSKTELKKREKQRARELAKAKKQAEKAASAPVAAPKSSSKKEE 68

Query: 769 QLN 777
            L+
Sbjct: 69  DLD 71


>SPAC17A5.01 |pex6||peroxin-6 |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 948

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 10/54 (18%), Positives = 30/54 (55%)
 Frame = +1

Query: 292  SENLTVVLESDGTEVDDEEYFSTLDPDTSLMILHGNEKWVPNMPKCQVSLDQTD 453
            +  + +++++ GT++  EE+F   +   SL +    E ++ ++ K + S+ + +
Sbjct: 883  TNEIDLLIQASGTDLSTEEFFKRNENQDSLELRITKEDFLTSLKKLRPSISEQE 936


>SPAC56F8.06c |alg10||dolichyl-phosphate-glucose-glycolipid
           alpha-glucosyltransferase Alg10|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 445

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 12/30 (40%), Positives = 20/30 (66%), Gaps = 2/30 (6%)
 Frame = +3

Query: 75  FLGNRDFIICFYFVIEISK--QSSFTFSIL 158
           +LG   ++I +YF ++ISK   +S TF +L
Sbjct: 341 YLGPFSYLILYYFFLDISKLQMTSLTFFLL 370


>SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase
            Mok11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2397

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 11/25 (44%), Positives = 17/25 (68%), Gaps = 2/25 (8%)
 Frame = -3

Query: 496  QQDSPLV--LYHPKLYHRSDLTIPD 428
            + D+PL   LYHP ++  SD+ IP+
Sbjct: 1795 ESDTPLQNKLYHPGMWSSSDIRIPN 1819


>SPAC1142.01 ||SPAC17G6.18|DUF654 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 667

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 17/53 (32%), Positives = 24/53 (45%)
 Frame = +1

Query: 343 EEYFSTLDPDTSLMILHGNEKWVPNMPKCQVSLDQTDDIALGDKEQVASLVGR 501
           E Y  T DP+  LM+L  +   +  + +    +DQ      GD E  A LV R
Sbjct: 272 EYYVQTYDPNNLLMLLRSHPFHIDTLLQVSEIIDQQ-----GDHELSAELVAR 319


>SPBC20F10.03 |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 446

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = +1

Query: 163 KNMENDINKPYKICDVNREKKKGIVAMSLEDLLIKV 270
           K  E  + K Y IC  +  K+      SLE+LL+K+
Sbjct: 67  KEREEHLEKIYVICTRHYAKRISENVASLEELLLKI 102


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,727,932
Number of Sequences: 5004
Number of extensions: 80693
Number of successful extensions: 206
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 200
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 206
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 450492750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)