Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP06_F_L12
(922 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
L10990-8|AAB59173.2| 223|Caenorhabditis elegans Hypothetical pr... 32 0.50
AF098992-14|AAD34669.1| 346|Caenorhabditis elegans Hypothetical... 29 4.7
Z49907-11|CAF31469.1| 844|Caenorhabditis elegans Hypothetical p... 29 6.2
Z49907-10|CAC42250.1| 875|Caenorhabditis elegans Hypothetical p... 29 6.2
Z49907-9|CAA90092.1| 880|Caenorhabditis elegans Hypothetical pr... 29 6.2
Z48367-8|CAF31471.1| 844|Caenorhabditis elegans Hypothetical pr... 29 6.2
Z48367-7|CAC42266.1| 875|Caenorhabditis elegans Hypothetical pr... 29 6.2
Z48367-6|CAA88325.1| 880|Caenorhabditis elegans Hypothetical pr... 29 6.2
AF319613-1|AAG49523.1| 880|Caenorhabditis elegans CLC-type chlo... 29 6.2
AF173171-1|AAF13164.1| 844|Caenorhabditis elegans CLC chloride ... 29 6.2
AF024502-6|AAB70378.4| 402|Caenorhabditis elegans Hypothetical ... 28 8.2
>L10990-8|AAB59173.2| 223|Caenorhabditis elegans Hypothetical
protein C30A5.3 protein.
Length = 223
Score = 32.3 bits (70), Expect = 0.50
Identities = 15/41 (36%), Positives = 22/41 (53%)
Frame = +1
Query: 604 YKDTRRFPLEAPSCALLFRXCRLPDTCPPFSLREAWRFLIA 726
Y+ R+F +E ALL + +P+TC + E W FL A
Sbjct: 71 YEHLRQFCIELNGLALLLQRECIPETCQQMTATEQWIFLCA 111
>AF098992-14|AAD34669.1| 346|Caenorhabditis elegans Hypothetical
protein F53C3.13a protein.
Length = 346
Score = 29.1 bits (62), Expect = 4.7
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = -3
Query: 131 VQTHQCILSCLDPINPHLKGDPRPXVPT 48
V T I+S +DP N LK +P+ VPT
Sbjct: 302 VSTQHVIVSEVDPANQRLKTNPKDTVPT 329
>Z49907-11|CAF31469.1| 844|Caenorhabditis elegans Hypothetical
protein B0491.8c protein.
Length = 844
Score = 28.7 bits (61), Expect = 6.2
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = +3
Query: 792 PVQPDRXALSGNYRLESNPGKTRLIATGXQPLVTGLA 902
PV+PDR SG + S+ K +L+ T P GL+
Sbjct: 789 PVKPDRKLTSGTFLDMSHMNKDKLLNTPQTPPANGLS 825
>Z49907-10|CAC42250.1| 875|Caenorhabditis elegans Hypothetical
protein B0491.8b protein.
Length = 875
Score = 28.7 bits (61), Expect = 6.2
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = +3
Query: 792 PVQPDRXALSGNYRLESNPGKTRLIATGXQPLVTGLA 902
PV+PDR SG + S+ K +L+ T P GL+
Sbjct: 820 PVKPDRKLTSGTFLDMSHMNKDKLLNTPQTPPANGLS 856
>Z49907-9|CAA90092.1| 880|Caenorhabditis elegans Hypothetical
protein B0491.8a protein.
Length = 880
Score = 28.7 bits (61), Expect = 6.2
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = +3
Query: 792 PVQPDRXALSGNYRLESNPGKTRLIATGXQPLVTGLA 902
PV+PDR SG + S+ K +L+ T P GL+
Sbjct: 825 PVKPDRKLTSGTFLDMSHMNKDKLLNTPQTPPANGLS 861
>Z48367-8|CAF31471.1| 844|Caenorhabditis elegans Hypothetical
protein B0491.8c protein.
Length = 844
Score = 28.7 bits (61), Expect = 6.2
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = +3
Query: 792 PVQPDRXALSGNYRLESNPGKTRLIATGXQPLVTGLA 902
PV+PDR SG + S+ K +L+ T P GL+
Sbjct: 789 PVKPDRKLTSGTFLDMSHMNKDKLLNTPQTPPANGLS 825
>Z48367-7|CAC42266.1| 875|Caenorhabditis elegans Hypothetical
protein B0491.8b protein.
Length = 875
Score = 28.7 bits (61), Expect = 6.2
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = +3
Query: 792 PVQPDRXALSGNYRLESNPGKTRLIATGXQPLVTGLA 902
PV+PDR SG + S+ K +L+ T P GL+
Sbjct: 820 PVKPDRKLTSGTFLDMSHMNKDKLLNTPQTPPANGLS 856
>Z48367-6|CAA88325.1| 880|Caenorhabditis elegans Hypothetical
protein B0491.8a protein.
Length = 880
Score = 28.7 bits (61), Expect = 6.2
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = +3
Query: 792 PVQPDRXALSGNYRLESNPGKTRLIATGXQPLVTGLA 902
PV+PDR SG + S+ K +L+ T P GL+
Sbjct: 825 PVKPDRKLTSGTFLDMSHMNKDKLLNTPQTPPANGLS 861
>AF319613-1|AAG49523.1| 880|Caenorhabditis elegans CLC-type
chloride channel CLH-2b protein.
Length = 880
Score = 28.7 bits (61), Expect = 6.2
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = +3
Query: 792 PVQPDRXALSGNYRLESNPGKTRLIATGXQPLVTGLA 902
PV+PDR SG + S+ K +L+ T P GL+
Sbjct: 825 PVKPDRKLTSGTFLDMSHMNKDKLLNTPQTPPANGLS 861
>AF173171-1|AAF13164.1| 844|Caenorhabditis elegans CLC chloride
channel protein protein.
Length = 844
Score = 28.7 bits (61), Expect = 6.2
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = +3
Query: 792 PVQPDRXALSGNYRLESNPGKTRLIATGXQPLVTGLA 902
PV+PDR SG + S+ K +L+ T P GL+
Sbjct: 789 PVKPDRKLTSGTFLDMSHMNKDKLLNTPQTPPANGLS 825
>AF024502-6|AAB70378.4| 402|Caenorhabditis elegans Hypothetical
protein M151.1 protein.
Length = 402
Score = 28.3 bits (60), Expect = 8.2
Identities = 14/58 (24%), Positives = 25/58 (43%)
Frame = -2
Query: 780 HSPAWSERPTPN*DTYSVSYEKAPRFPKGERRTGIR*AAGSEQESARGSFQGETPGIF 607
H AW+ R P ++ + K ++ K E + G G+E+ +G+T F
Sbjct: 96 HDKAWNNRSLPQKSRWNQASVKLAQYQKAEEKMGFIKVFGTEEFQNYSKRRGQTRNSF 153
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,260,049
Number of Sequences: 27780
Number of extensions: 408892
Number of successful extensions: 1044
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 979
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1044
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2360254050
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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