Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP06_F_L08
(926 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC119.12 |||Golgi matrix protein |Schizosaccharomyces pombe|ch... 33 0.075
SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces... 32 0.13
SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyc... 31 0.17
SPAC3H1.05 |||CAAX prenyl protease |Schizosaccharomyces pombe|ch... 29 0.93
SPBC365.07c |||TATA element modulatory factor homolog |Schizosac... 28 1.6
SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomy... 28 2.1
SPAC3C7.02c |||protein kinase inhibitor |Schizosaccharomyces pom... 28 2.1
SPAC25G10.04c |rec10|rec20|meiotic recombination protein Rec10 |... 26 8.7
SPAC25G10.07c |cut7||kinesin-like protein Cut7|Schizosaccharomyc... 26 8.7
SPAC26F1.11 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 26 8.7
SPAC17H9.05 |ebp2||rRNA processing protein Ebp2|Schizosaccharomy... 26 8.7
>SPBC119.12 |||Golgi matrix protein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 401
Score = 32.7 bits (71), Expect = 0.075
Identities = 25/98 (25%), Positives = 46/98 (46%), Gaps = 1/98 (1%)
Frame = +1
Query: 178 RETNMTENSTKENLLQPTTLQEAINI-IKFLKTSHKQEIAKLKETFAKQAEVIKKLETNR 354
RET E E + + T Q + I ++ K SH + + +L + K + + + ++
Sbjct: 197 RETERQEQYEVE-IQRHLTNQHQLEIELESTKASHTENLGELTRNWQKAMDDVTEKFASK 255
Query: 355 KKELEFLSSELQKYEVNLALRTETVAQQLAQKDLTIEK 468
KE E L +EL + L+ R + ++ +K L I K
Sbjct: 256 SKEYEDLQNELDATQKRLS-RVSDLEHEVKEKTLLIGK 292
>SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1727
Score = 31.9 bits (69), Expect = 0.13
Identities = 29/91 (31%), Positives = 51/91 (56%)
Frame = +1
Query: 199 NSTKENLLQPTTLQEAINIIKFLKTSHKQEIAKLKETFAKQAEVIKKLETNRKKELEFLS 378
NSTKE L +T ++ I+ L T+ K+E+ K+++ K K E ++E+E
Sbjct: 1449 NSTKEEL--SSTQRKLSEIMDILNTT-KEELEKVRQNSNKSEGTSKDTEIPNEEEME--R 1503
Query: 379 SELQKYEVNLALRTETVAQQLAQKDLTIEKQ 471
++ + EV L LR+ +A++L QK+ + KQ
Sbjct: 1504 KKVMQQEV-LRLRSR-IAKEL-QKNELLRKQ 1531
>SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1085
Score = 31.5 bits (68), Expect = 0.17
Identities = 19/62 (30%), Positives = 29/62 (46%)
Frame = +1
Query: 301 KETFAKQAEVIKKLETNRKKELEFLSSELQKYEVNLALRTETVAQQLAQKDLTIEKQXXK 480
+E KQ +KK+ KK + +L K E E +A+Q AQK L ++Q
Sbjct: 578 EENKRKQERELKKIREKEKKRDKKKQLKLAKEEERQRREAERLAEQAAQKALEAKRQEEA 637
Query: 481 KK 486
+K
Sbjct: 638 RK 639
>SPAC3H1.05 |||CAAX prenyl protease |Schizosaccharomyces pombe|chr
1|||Manual
Length = 474
Score = 29.1 bits (62), Expect = 0.93
Identities = 12/35 (34%), Positives = 22/35 (62%)
Frame = +2
Query: 50 VLLTRRLGVWLILFVLFX*NFRILIWNSYLVFGFI 154
+L++ +GV++ + F NF + W +Y+VFG I
Sbjct: 210 LLMSVVVGVFVKILTKFGDNFIMYAWGAYIVFGLI 244
>SPBC365.07c |||TATA element modulatory factor homolog
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 547
Score = 28.3 bits (60), Expect = 1.6
Identities = 27/75 (36%), Positives = 38/75 (50%), Gaps = 3/75 (4%)
Frame = +1
Query: 250 NIIKFLKTSHKQEIAKLKETFAKQAEVIKKLETNRKKELEFLSSELQK--YEVNLA-LRT 420
N IK LK S + KLK KQA +L+ + KE+E ELQK +E ++ L
Sbjct: 64 NTIKQLKKSLSEAETKLKRLDEKQA--TPELQVSDSKEME-EQLELQKSQFEKRISILEK 120
Query: 421 ETVAQQLAQKDLTIE 465
E Q ++LT+E
Sbjct: 121 EKEDLQRKMEELTVE 135
>SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1115
Score = 27.9 bits (59), Expect = 2.1
Identities = 17/65 (26%), Positives = 32/65 (49%)
Frame = +1
Query: 235 LQEAINIIKFLKTSHKQEIAKLKETFAKQAEVIKKLETNRKKELEFLSSELQKYEVNLAL 414
LQE + I K+ ++K + EV+ KL T ++E+E +++ E +++L
Sbjct: 537 LQEYVEEITQELQDTKEVLSKSSKESDDYEEVVGKLRTEAEREIEKFEKTIRENEESISL 596
Query: 415 RTETV 429
E V
Sbjct: 597 FKEEV 601
>SPAC3C7.02c |||protein kinase inhibitor |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 383
Score = 27.9 bits (59), Expect = 2.1
Identities = 13/59 (22%), Positives = 28/59 (47%)
Frame = +1
Query: 208 KENLLQPTTLQEAINIIKFLKTSHKQEIAKLKETFAKQAEVIKKLETNRKKELEFLSSE 384
K+N + P+T + A+N+ K + + AK+ + K+E + + E ++ E
Sbjct: 19 KQNQIPPSTTRRAVNVNKLGRQFRYPSVGMFTPEMAKRLAALVKMEKDLLRSYENVAME 77
>SPAC25G10.04c |rec10|rec20|meiotic recombination protein Rec10
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 791
Score = 25.8 bits (54), Expect = 8.7
Identities = 19/85 (22%), Positives = 37/85 (43%)
Frame = +1
Query: 175 NRETNMTENSTKENLLQPTTLQEAINIIKFLKTSHKQEIAKLKETFAKQAEVIKKLETNR 354
N N + S + LQ T I + + + K+ +KL+ +VIK+ +
Sbjct: 704 NEAYNPSSKSATIDGLQRYTSMIGNQIYEGILQNEKELRSKLEAYHINCNKVIKEFSKRQ 763
Query: 355 KKELEFLSSELQKYEVNLALRTETV 429
+ + EL + EVNL + +++
Sbjct: 764 TARYKIIEKELAQIEVNLVSQIDSL 788
>SPAC25G10.07c |cut7||kinesin-like protein Cut7|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1085
Score = 25.8 bits (54), Expect = 8.7
Identities = 21/77 (27%), Positives = 36/77 (46%), Gaps = 1/77 (1%)
Frame = +1
Query: 169 AGNRETNMTENSTKENLLQPTTLQ-EAINIIKFLKTSHKQEIAKLKETFAKQAEVIKKLE 345
+ + S +E+ + LQ + +N L+ S K E KLK + E KK E
Sbjct: 497 SSREQLQYVSKSNQEHKKEVEALQLQLVNSSTELE-SVKSENEKLKNELVLEIEKRKKYE 555
Query: 346 TNRKKELEFLSSELQKY 396
TN K + ++++L +Y
Sbjct: 556 TNEAK-ITTVATDLSQY 571
>SPAC26F1.11 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 105
Score = 25.8 bits (54), Expect = 8.7
Identities = 12/46 (26%), Positives = 21/46 (45%), Gaps = 2/46 (4%)
Frame = -3
Query: 174 TCKKKENINPKTKYEF--QIKILKFHXNNTNKINHTPRRLVNKTSK 43
TCK + ++ K K+L+ + ++K N PRR+ K
Sbjct: 18 TCKNQSTVHQKVNKSLGNSNKVLRSNAVQSDKANREPRRITKSVKK 63
>SPAC17H9.05 |ebp2||rRNA processing protein Ebp2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 333
Score = 25.8 bits (54), Expect = 8.7
Identities = 20/70 (28%), Positives = 32/70 (45%)
Frame = +1
Query: 277 HKQEIAKLKETFAKQAEVIKKLETNRKKELEFLSSELQKYEVNLALRTETVAQQLAQKDL 456
+KQ ++ +K FAK E + E L S+ +V L E A++L+Q+
Sbjct: 143 YKQGVSSVKAAFAKLREANVLISRPHDYFAEMLKSDDHMEKVRQELIKEATAKKLSQQ-- 200
Query: 457 TIEKQXXKKK 486
+KQ KK
Sbjct: 201 -AKKQRELKK 209
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,224,035
Number of Sequences: 5004
Number of extensions: 32986
Number of successful extensions: 115
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 114
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 469338710
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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