Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP06_F_L07
         (859 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC13C5.07 |rad32|mre11|Rad32 nuclease|Schizosaccharomyces pomb...   174   2e-44
SPAC630.15 |mug177||sequence orphan|Schizosaccharomyces pombe|ch...    30   0.37 
SPAC824.09c |||GTPase activating protein |Schizosaccharomyces po...    28   1.5  
SPAC2C4.07c |||ribonuclease II |Schizosaccharomyces pombe|chr 1|...    27   3.4  
SPAC3H8.09c |nab3||poly|Schizosaccharomyces pombe|chr 1|||Manual       27   3.4  
SPCC126.09 |||vacuolar membrane zinc transporter |Schizosaccharo...    27   4.5  
SPAC13G6.08 |||Cdc20/Fizzy family WD repeat protein|Schizosaccha...    26   6.0  
SPAC20H4.06c |||RNA-binding protein|Schizosaccharomyces pombe|ch...    26   7.9  

>SPAC13C5.07 |rad32|mre11|Rad32 nuclease|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 649

 Score =  174 bits (423), Expect = 2e-44
 Identities = 79/146 (54%), Positives = 105/146 (71%), Gaps = 4/146 (2%)
 Frame = +3

Query: 201 DDTLRILIASDIHLGFMENDPVRGEDSFIAFEEVLSLAVQCDVDLILLGGDLFDQAKPSV 380
           ++T+RILI+SD H+G+ E DPVRG DSF++F E+L +A + DVD+ILLGGD+F   KPS 
Sbjct: 15  ENTIRILISSDPHVGYGEKDPVRGNDSFVSFNEILEIARERDVDMILLGGDIFHDNKPSR 74

Query: 381 NCMFKCTEIIRKYCLGDKPVSIELLSDQIKNFSRT----VNYEDPNLNISYPILSIHGNH 548
             +++    +R  CLGDKP  +ELLSD       T    +NY DPN+N++ P+ SIHGNH
Sbjct: 75  KALYQALRSLRLNCLGDKPCELELLSDTSLTTGDTAVCNINYLDPNINVAIPVFSIHGNH 134

Query: 549 DDPVGQGSVSSLDILSITGLVNYFGK 626
           DDP G G  S+LDIL +TGLVNYFG+
Sbjct: 135 DDPSGDGRYSALDILQVTGLVNYFGR 160


>SPAC630.15 |mug177||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 105

 Score = 30.3 bits (65), Expect = 0.37
 Identities = 12/42 (28%), Positives = 23/42 (54%)
 Frame = -3

Query: 359 KQITS*KYQINITLYRKRQNFFKSYKAIFSAYRIIFHETKMN 234
           + +T+  + + I L R+ +     YK +FS YR+ F   ++N
Sbjct: 28  RNVTNVYFSLRILLNRQNEGNNCKYKLVFSLYRVSFRRMRLN 69


>SPAC824.09c |||GTPase activating protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 320

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 25/71 (35%), Positives = 32/71 (45%), Gaps = 7/71 (9%)
 Frame = -1

Query: 433 LSPRQYLRIISVHLNIQLTEGLA*SNRSPPKSIKSTSHCTARDKTSSK-------AIKLS 275
           L P Q  R +S  +N  L    A S  S   S+KSTS  T  + TS K       ++  S
Sbjct: 134 LKPEQNTRPVS-EVNASLDLNTA-SRSSSAHSVKSTSSATVTNVTSKKEAISATTSLAQS 191

Query: 274 SPRTGSFSMKP 242
           SP   S S +P
Sbjct: 192 SPNLASLSKQP 202


>SPAC2C4.07c |||ribonuclease II |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 927

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 17/46 (36%), Positives = 27/46 (58%), Gaps = 2/46 (4%)
 Frame = +3

Query: 102 PIGIIVFKLFEITS*SSCTSKIMIENDISAWSP--DDTLRILIASD 233
           P+G++  KL  IT   + T+ +++EN IS+ SP  D+ L  L   D
Sbjct: 386 PMGVLGEKLGNITDVEAYTNALLLENGISS-SPFSDEVLNCLPPDD 430


>SPAC3H8.09c |nab3||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 738

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 16/60 (26%), Positives = 26/60 (43%)
 Frame = +3

Query: 477 SRTVNYEDPNLNISYPILSIHGNHDDPVGQGSVSSLDILSITGLVNYFGKWTDYXPVRIS 656
           S T +Y    +    P   I  N + P   GS+ S+++  + G +      T Y P R+S
Sbjct: 611 SSTPSYNGERIVPDVPSPCISTNPNLPALVGSLDSVNLHHLLGFIQNTYSTTSYIPTRVS 670


>SPCC126.09 |||vacuolar membrane zinc transporter
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 418

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 18/61 (29%), Positives = 27/61 (44%)
 Frame = -1

Query: 361 SNRSPPKSIKSTSHCTARDKTSSKAIKLSSPRTGSFSMKPR*ISEAINILSVSSGDHAEM 182
           ++RSPP S K  S C +    SS+ +       GS+      + E   +L  SS  H+  
Sbjct: 166 NHRSPPASCKRLSSCESSGSPSSRVV---GSLQGSYCPSGTHLHEGSLLLEDSSARHSSD 222

Query: 181 S 179
           S
Sbjct: 223 S 223


>SPAC13G6.08 |||Cdc20/Fizzy family WD repeat
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 535

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 17/53 (32%), Positives = 28/53 (52%)
 Frame = +3

Query: 189 AWSPDDTLRILIASDIHLGFMENDPVRGEDSFIAFEEVLSLAVQCDVDLILLG 347
           +WSP   L I +A +I+L   E  P R  +  I   +V S+A   + D++ +G
Sbjct: 198 SWSPKGDLAIGLAENIYLWSKELGPTRVLEESI--YDVSSVAYSYNGDILAVG 248


>SPAC20H4.06c |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 534

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 11/39 (28%), Positives = 21/39 (53%)
 Frame = +3

Query: 468 KNFSRTVNYEDPNLNISYPILSIHGNHDDPVGQGSVSSL 584
           K ++  +N  D ++ I  P+L    N DD +G+  + +L
Sbjct: 110 KVYTSKINTIDTSIPIDDPLLREFSNRDDSIGEKMLKNL 148


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,002,123
Number of Sequences: 5004
Number of extensions: 58450
Number of successful extensions: 133
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 127
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 132
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 426466470
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)