Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP06_F_L07
         (859 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1284 + 32376870-32376874,32376876-32376935,32377166-323773...   176   2e-44
08_01_0522 - 4545166-4545174,4545295-4545447,4545566-4545727,454...   156   2e-38
03_06_0588 - 34924061-34924644,34924662-34925058                       29   3.6  
02_05_1052 + 33770355-33773981,33774217-33774336,33774880-337749...    29   3.6  
02_01_0702 - 5243064-5243159,5243280-5243331,5243453-5243526,524...    29   6.3  

>04_04_1284 +
           32376870-32376874,32376876-32376935,32377166-32377301,
           32377439-32377596,32377791-32377881,32377975-32378094,
           32378166-32378234,32378354-32378445,32378578-32378680,
           32378761-32378868,32378949-32379011,32379073-32379144,
           32379322-32379399,32379478-32379540,32379617-32379680,
           32379817-32379902,32380456-32380569,32380760-32380837,
           32381068-32381303,32381486-32381576,32381706-32381894,
           32382082-32382117
          Length = 703

 Score =  176 bits (428), Expect = 2e-44
 Identities = 81/144 (56%), Positives = 105/144 (72%), Gaps = 3/144 (2%)
 Frame = +3

Query: 204 DTLRILIASDIHLGFMENDPVRGEDSFIAFEEVLSLAVQCDVDLILLGGDLFDQAKPSVN 383
           +TLR+L+A+D HLG+ME D +R  DSF AFEE+ SLA Q  VD +LLGGDLF + KPS +
Sbjct: 27  NTLRVLVATDCHLGYMEKDEIRRFDSFEAFEEICSLAEQNKVDFVLLGGDLFHENKPSRS 86

Query: 384 CMFKCTEIIRKYCLGDKPVSIELLSDQIKNFSR---TVNYEDPNLNISYPILSIHGNHDD 554
            + K  EI+R+YCL D+PV  +++SDQ  NF      VNYEDPN N+  P+ +IHGNHDD
Sbjct: 87  TLVKTIEILRRYCLNDQPVKFQVVSDQTINFPNRFGQVNYEDPNFNVGLPVFTIHGNHDD 146

Query: 555 PVGQGSVSSLDILSITGLVNYFGK 626
           P G  ++S++DILS   LVNYFGK
Sbjct: 147 PAGVDNLSAIDILSACNLVNYFGK 170


>08_01_0522 -
           4545166-4545174,4545295-4545447,4545566-4545727,
           4545821-4545895,4545974-4546087,4546257-4546339,
           4546496-4546556,4546664-4546726,4546804-4546908,
           4547454-4547525,4547602-4547664,4547746-4547853,
           4547937-4548039,4548131-4548207,4548335-4548403,
           4548488-4548607,4548749-4548839,4549020-4549177,
           4549696-4549834,4551164-4551186
          Length = 615

 Score =  156 bits (379), Expect = 2e-38
 Identities = 75/152 (49%), Positives = 101/152 (66%), Gaps = 5/152 (3%)
 Frame = +3

Query: 186 SAWSPDDT--LRILIASDIHLGFMENDPVRGEDSFIAFEEVLSLAVQCDVDLILLGGDLF 359
           ++W  ++   LRIL+A+D HLG++E D +R  DSF  FEE+ SLAV   VD ILLGG+LF
Sbjct: 6   ASWDEEENSMLRILVATDCHLGYLEKDEIRRFDSFDTFEEICSLAVINKVDFILLGGNLF 65

Query: 360 DQAKPSVNCMFKCTEIIRKYCLGDKPVSIELLSDQ---IKNFSRTVNYEDPNLNISYPIL 530
            + KPS++ + K  EIIR YCL D  V  +++SDQ   ++N    VN+EDPN NI  P+ 
Sbjct: 66  HENKPSISTLVKSMEIIRSYCLNDHQVQFQVVSDQAACLQNRFGRVNFEDPNFNIGLPVF 125

Query: 531 SIHGNHDDPVGQGSVSSLDILSITGLVNYFGK 626
           ++HG HD P G   +S+ DILS    VNYFGK
Sbjct: 126 TVHGTHDGPAGVDGLSATDILSACNFVNYFGK 157


>03_06_0588 - 34924061-34924644,34924662-34925058
          Length = 326

 Score = 29.5 bits (63), Expect = 3.6
 Identities = 19/54 (35%), Positives = 24/54 (44%), Gaps = 2/54 (3%)
 Frame = +3

Query: 174 ENDISAWSPD--DTLRILIASDIHLGFMENDPVRGEDSFIAFEEVLSLAVQCDV 329
           END  AW PD      +  A  + L F   + V    S IA  +V  L  +CDV
Sbjct: 52  ENDFIAWHPDKHGIFSVRSAYSLALDFSRTE-VSSSSSSIAMSKVWKLVWKCDV 104


>02_05_1052 +
           33770355-33773981,33774217-33774336,33774880-33774996,
           33775322-33775411,33775971-33776078,33776304-33776351
          Length = 1369

 Score = 29.5 bits (63), Expect = 3.6
 Identities = 21/62 (33%), Positives = 30/62 (48%)
 Frame = -1

Query: 460 SDSNSILTGLSPRQYLRIISVHLNIQLTEGLA*SNRSPPKSIKSTSHCTARDKTSSKAIK 281
           S S++ L G+SPR+ L    +  NI  TE     +R+ P S+ S    T R   S  A  
Sbjct: 552 STSSASLRGMSPRRRLASDGISKNITFTEK---DDRTMPSSVASQEISTIRRLPSDGADS 608

Query: 280 LS 275
           +S
Sbjct: 609 IS 610


>02_01_0702 -
           5243064-5243159,5243280-5243331,5243453-5243526,
           5243633-5243683,5243840-5243899,5244131-5244232,
           5244416-5244502,5244759-5244803,5245241-5245283,
           5245371-5245499,5245599-5245676,5245762-5245811,
           5246026-5246108,5246780-5246843,5246953-5247066,
           5247558-5247623,5247713-5247778,5248405-5248446,
           5248590-5248652,5248744-5248794
          Length = 471

 Score = 28.7 bits (61), Expect = 6.3
 Identities = 13/50 (26%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
 Frame = +3

Query: 405 IIRKYCLGDKPVSIELLSDQIKNFSRTVNYEDPN-LNISYPILSIHGNHD 551
           + R+   G K ++ +   D   NFS  + ++DP  L +    ++IH +H+
Sbjct: 223 VYRRIFKGGKTIAADNALDYAANFSHMLGFDDPKMLELMRLYITIHTDHE 272


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,727,186
Number of Sequences: 37544
Number of extensions: 339024
Number of successful extensions: 709
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 700
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 707
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2397465936
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)