Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP06_F_L06
(937 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_08_0319 - 16712572-16712654,16712756-16712797,16713955-167142... 165 6e-41
03_01_0276 + 2124538-2124550,2124678-2124962,2126813-2126854,212... 165 6e-41
02_05_1201 + 34929577-34929589,34930252-34930587,34931378-349314... 165 6e-41
12_02_1115 - 26173351-26173725,26174241-26174344,26174812-26174845 57 2e-08
03_05_0291 - 22837412-22838128 29 4.0
01_01_0098 + 744582-745380,746107-746130,746500-747569 29 5.3
03_06_0296 + 32901696-32901892,32901989-32902232,32903992-329041... 29 7.0
02_02_0500 - 10993675-10994067,10994434-10995738 29 7.0
06_03_0458 - 20995834-20996004,20996404-20997309,20997778-209979... 28 9.3
>10_08_0319 -
16712572-16712654,16712756-16712797,16713955-16714239,
16714346-16714358
Length = 140
Score = 165 bits (400), Expect = 6e-41
Identities = 73/89 (82%), Positives = 84/89 (94%)
Frame = +3
Query: 222 KXIKGRLNRLPAAGSGDMIVATVKKGKPELRKKVMPAVVIRQRKPFRRRDGVFIYFEDNA 401
K IKGRLNRLP+A GDM++ATVKKGKP+LRKKVMPAV++RQRKP+RR+DGV++YFEDNA
Sbjct: 43 KGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVYMYFEDNA 102
Query: 402 GVIVNNKGEMKGSAITGPVAKECADLWPR 488
GVIVN KGEMKGSAITGP+ KECADLWPR
Sbjct: 103 GVIVNPKGEMKGSAITGPIGKECADLWPR 131
Score = 47.6 bits (108), Expect = 1e-05
Identities = 20/26 (76%), Positives = 22/26 (84%)
Frame = +1
Query: 121 AGAKFRISLGLPVGAVINCADNTGCK 198
AG KFR+SLGLPV A +NCADNTG K
Sbjct: 10 AGNKFRMSLGLPVAATVNCADNTGAK 35
>03_01_0276 +
2124538-2124550,2124678-2124962,2126813-2126854,
2126943-2127025
Length = 140
Score = 165 bits (400), Expect = 6e-41
Identities = 73/89 (82%), Positives = 84/89 (94%)
Frame = +3
Query: 222 KXIKGRLNRLPAAGSGDMIVATVKKGKPELRKKVMPAVVIRQRKPFRRRDGVFIYFEDNA 401
K IKGRLNRLP+A GDM++ATVKKGKP+LRKKVMPAV++RQRKP+RR+DGV++YFEDNA
Sbjct: 43 KGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVYMYFEDNA 102
Query: 402 GVIVNNKGEMKGSAITGPVAKECADLWPR 488
GVIVN KGEMKGSAITGP+ KECADLWPR
Sbjct: 103 GVIVNPKGEMKGSAITGPIGKECADLWPR 131
Score = 47.6 bits (108), Expect = 1e-05
Identities = 20/26 (76%), Positives = 22/26 (84%)
Frame = +1
Query: 121 AGAKFRISLGLPVGAVINCADNTGCK 198
AG KFR+SLGLPV A +NCADNTG K
Sbjct: 10 AGNKFRMSLGLPVAATVNCADNTGAK 35
>02_05_1201 +
34929577-34929589,34930252-34930587,34931378-34931419,
34931630-34931712
Length = 157
Score = 165 bits (400), Expect = 6e-41
Identities = 73/89 (82%), Positives = 84/89 (94%)
Frame = +3
Query: 222 KXIKGRLNRLPAAGSGDMIVATVKKGKPELRKKVMPAVVIRQRKPFRRRDGVFIYFEDNA 401
K IKGRLNRLP+A GDM++ATVKKGKP+LRKKVMPAV++RQRKP+RR+DGV++YFEDNA
Sbjct: 60 KGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVYMYFEDNA 119
Query: 402 GVIVNNKGEMKGSAITGPVAKECADLWPR 488
GVIVN KGEMKGSAITGP+ KECADLWPR
Sbjct: 120 GVIVNPKGEMKGSAITGPIGKECADLWPR 148
Score = 47.6 bits (108), Expect = 1e-05
Identities = 20/26 (76%), Positives = 22/26 (84%)
Frame = +1
Query: 121 AGAKFRISLGLPVGAVINCADNTGCK 198
AG KFR+SLGLPV A +NCADNTG K
Sbjct: 27 AGNKFRMSLGLPVAATVNCADNTGAK 52
>12_02_1115 - 26173351-26173725,26174241-26174344,26174812-26174845
Length = 170
Score = 56.8 bits (131), Expect = 2e-08
Identities = 31/70 (44%), Positives = 43/70 (61%), Gaps = 3/70 (4%)
Frame = +3
Query: 267 GDMIVATVKKGKPELRKK---VMPAVVIRQRKPFRRRDGVFIYFEDNAGVIVNNKGEMKG 437
GD I+ +VK+ +P + K V+ VV+R R DG I F+DNA V+VNNKGE+ G
Sbjct: 84 GDTIIGSVKEAQPRGKVKKGDVVYGVVVRAAMKRGRNDGSEIQFDDNAIVLVNNKGELIG 143
Query: 438 SAITGPVAKE 467
+ + GPV E
Sbjct: 144 TRVFGPVPHE 153
>03_05_0291 - 22837412-22838128
Length = 238
Score = 29.5 bits (63), Expect = 4.0
Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
Frame = -1
Query: 502 AFEAIRGHRSAHSLATGPVMAEPFI--SPLLLTMTPALSS 389
+++A+ GH+++H T P MA + P T +PA SS
Sbjct: 100 SYQALGGHKTSHRPRTPPTMAAVVVVDEPAATTASPAASS 139
>01_01_0098 + 744582-745380,746107-746130,746500-747569
Length = 630
Score = 29.1 bits (62), Expect = 5.3
Identities = 14/39 (35%), Positives = 19/39 (48%)
Frame = -2
Query: 282 PQSCPRNRPPAVCSGDL*XPWTAITYRFFAPCVVGAVDY 166
P SC + +CSG T + + F PC V A+DY
Sbjct: 60 PSSCGSSHAKLICSGQD----TILHHPFLGPCKVTAIDY 94
>03_06_0296 +
32901696-32901892,32901989-32902232,32903992-32904112,
32904219-32904406
Length = 249
Score = 28.7 bits (61), Expect = 7.0
Identities = 14/46 (30%), Positives = 24/46 (52%)
Frame = -3
Query: 407 DTRIVLKVYKYSITPSERFPLPDDHCRHYLFPEFRFTLFDCGHNHV 270
+ I+++ Y+ T +R P P D + +F F L+DC +N V
Sbjct: 101 EINIIIEAYR---TLRDRGPYPADQVVRDINGKFAFVLYDCSNNSV 143
>02_02_0500 - 10993675-10994067,10994434-10995738
Length = 565
Score = 28.7 bits (61), Expect = 7.0
Identities = 21/70 (30%), Positives = 35/70 (50%), Gaps = 4/70 (5%)
Frame = -1
Query: 451 PVMAEPFISPLLLTMTPALSSKYINTPSRLLNGFRCLMTT---AGITFFR-SSGLPFLTV 284
P EP I+ + ++PA+ +T S + NG+ +M+T G+ F + SSG + V
Sbjct: 225 PAPVEPIIANGKVKLSPAVMEMIYSTISGIENGYLPVMSTEGSGGVYFMKDSSGESNVAV 284
Query: 283 ATIMSPEPAA 254
+ EP A
Sbjct: 285 FKPIDEEPMA 294
>06_03_0458 -
20995834-20996004,20996404-20997309,20997778-20997942,
20998024-20998353,20998471-20998527,20998579-20998692,
20999220-20999381,20999465-20999527,21001100-21001207,
21001598-21001675,21001771-21001902
Length = 761
Score = 28.3 bits (60), Expect = 9.3
Identities = 13/31 (41%), Positives = 20/31 (64%), Gaps = 2/31 (6%)
Frame = +3
Query: 390 EDNAGVIV--NNKGEMKGSAITGPVAKECAD 476
ED +I+ N+KG +GS ITG + + CA+
Sbjct: 715 EDGDKIIMSSNDKGSNQGSFITGKIVESCAE 745
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,858,793
Number of Sequences: 37544
Number of extensions: 405296
Number of successful extensions: 989
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 956
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 989
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2682675460
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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