Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP06_F_L05
         (939 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY705405-1|AAU12514.1|  519|Anopheles gambiae nicotinic acetylch...    28   0.35 
AY705394-1|AAU12503.1|  557|Anopheles gambiae nicotinic acetylch...    25   3.3  
AY705398-1|AAU12507.1|  555|Anopheles gambiae nicotinic acetylch...    24   5.8  
AY705397-1|AAU12506.1|  555|Anopheles gambiae nicotinic acetylch...    24   5.8  
AY705396-1|AAU12505.1|  710|Anopheles gambiae nicotinic acetylch...    24   5.8  

>AY705405-1|AAU12514.1|  519|Anopheles gambiae nicotinic
           acetylcholine receptor subunitbeta 1 protein.
          Length = 519

 Score = 28.3 bits (60), Expect = 0.35
 Identities = 14/31 (45%), Positives = 21/31 (67%)
 Frame = -2

Query: 128 SHVLSCVITLILWITVLPPLSELIPLASKNL 36
           S +LS V+ L+L   +LPP S ++PL +K L
Sbjct: 269 SILLSLVVFLLLVSKILPPTSLVLPLIAKYL 299


>AY705394-1|AAU12503.1|  557|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 1 protein.
          Length = 557

 Score = 25.0 bits (52), Expect = 3.3
 Identities = 13/39 (33%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
 Frame = -2

Query: 149 GLLLAFC-SHVLSCVITLILWITVLPPLSELIPLASKNL 36
           G  ++ C S +LS  +  +L   ++PP S  +PL  K L
Sbjct: 268 GEKISLCISILLSLTVFFLLLAEIIPPTSLTVPLLGKYL 306


>AY705398-1|AAU12507.1|  555|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 4 protein.
          Length = 555

 Score = 24.2 bits (50), Expect = 5.8
 Identities = 10/31 (32%), Positives = 19/31 (61%)
 Frame = -2

Query: 128 SHVLSCVITLILWITVLPPLSELIPLASKNL 36
           S ++S  +  +L + ++PP S ++PL  K L
Sbjct: 280 SILISLHVFFLLVVEIIPPTSLVVPLLGKYL 310


>AY705397-1|AAU12506.1|  555|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 4 protein.
          Length = 555

 Score = 24.2 bits (50), Expect = 5.8
 Identities = 10/31 (32%), Positives = 19/31 (61%)
 Frame = -2

Query: 128 SHVLSCVITLILWITVLPPLSELIPLASKNL 36
           S ++S  +  +L + ++PP S ++PL  K L
Sbjct: 280 SILISLHVFFLLVVEIIPPTSLVVPLLGKYL 310


>AY705396-1|AAU12505.1|  710|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 3 protein.
          Length = 710

 Score = 24.2 bits (50), Expect = 5.8
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = -2

Query: 128 SHVLSCVITLILWITVLPPLSELIPLASK 42
           S +LS  +  +L   ++PP S ++PL  K
Sbjct: 276 SILLSLTVFFLLLAEIIPPTSLVVPLLGK 304


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 836,107
Number of Sequences: 2352
Number of extensions: 16713
Number of successful extensions: 26
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26
length of database: 563,979
effective HSP length: 64
effective length of database: 413,451
effective search space used: 102535848
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)