Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP06_F_L05
         (939 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z80220-5|CAB02308.1|  493|Caenorhabditis elegans Hypothetical pr...    29   3.6  
X83888-1|CAA58765.1|  493|Caenorhabditis elegans beta-1 subunit ...    29   3.6  
U81144-1|AAB39358.1|  493|Caenorhabditis elegans non-alpha nicot...    29   3.6  
Z81093-1|CAB03148.2|  507|Caenorhabditis elegans Hypothetical pr...    29   4.8  
X98601-1|CAA67198.1|  507|Caenorhabditis elegans non-alpha nicot...    29   4.8  
X98246-1|CAA66902.1|  507|Caenorhabditis elegans nicotinic acety...    29   4.8  
U53336-10|AAA96182.2|  125|Caenorhabditis elegans Hypothetical p...    29   6.3  

>Z80220-5|CAB02308.1|  493|Caenorhabditis elegans Hypothetical
           protein T08G11.5 protein.
          Length = 493

 Score = 29.5 bits (63), Expect = 3.6
 Identities = 15/31 (48%), Positives = 20/31 (64%)
 Frame = -2

Query: 128 SHVLSCVITLILWITVLPPLSELIPLASKNL 36
           S +LS V+ L+L   +LPP S  IPL +K L
Sbjct: 267 SVLLSIVVFLLLVSKILPPTSSTIPLMAKYL 297


>X83888-1|CAA58765.1|  493|Caenorhabditis elegans beta-1 subunit of
           nicotinic acetylcholinereceptor protein.
          Length = 493

 Score = 29.5 bits (63), Expect = 3.6
 Identities = 15/31 (48%), Positives = 20/31 (64%)
 Frame = -2

Query: 128 SHVLSCVITLILWITVLPPLSELIPLASKNL 36
           S +LS V+ L+L   +LPP S  IPL +K L
Sbjct: 267 SVLLSIVVFLLLVSKILPPTSSTIPLMAKYL 297


>U81144-1|AAB39358.1|  493|Caenorhabditis elegans non-alpha
           nicotinic acetylcholinereceptor subunit precursor
           protein.
          Length = 493

 Score = 29.5 bits (63), Expect = 3.6
 Identities = 15/31 (48%), Positives = 20/31 (64%)
 Frame = -2

Query: 128 SHVLSCVITLILWITVLPPLSELIPLASKNL 36
           S +LS V+ L+L   +LPP S  IPL +K L
Sbjct: 267 SVLLSIVVFLLLVSKILPPTSSTIPLMAKYL 297


>Z81093-1|CAB03148.2|  507|Caenorhabditis elegans Hypothetical
           protein F09E8.7 protein.
          Length = 507

 Score = 29.1 bits (62), Expect = 4.8
 Identities = 14/29 (48%), Positives = 19/29 (65%)
 Frame = -2

Query: 122 VLSCVITLILWITVLPPLSELIPLASKNL 36
           +LS V+ L+L   +LPP S  IPL +K L
Sbjct: 277 LLSIVVFLLLVSKILPPTSSSIPLVAKYL 305


>X98601-1|CAA67198.1|  507|Caenorhabditis elegans non-alpha
           nicotinic acetylcholinereceptor subunit protein.
          Length = 507

 Score = 29.1 bits (62), Expect = 4.8
 Identities = 14/29 (48%), Positives = 19/29 (65%)
 Frame = -2

Query: 122 VLSCVITLILWITVLPPLSELIPLASKNL 36
           +LS V+ L+L   +LPP S  IPL +K L
Sbjct: 277 LLSIVVFLLLVSKILPPTSSSIPLVAKYL 305


>X98246-1|CAA66902.1|  507|Caenorhabditis elegans nicotinic
           acetylcholine receptor protein.
          Length = 507

 Score = 29.1 bits (62), Expect = 4.8
 Identities = 14/29 (48%), Positives = 19/29 (65%)
 Frame = -2

Query: 122 VLSCVITLILWITVLPPLSELIPLASKNL 36
           +LS V+ L+L   +LPP S  IPL +K L
Sbjct: 277 LLSIVVFLLLVSKILPPTSSSIPLVAKYL 305


>U53336-10|AAA96182.2|  125|Caenorhabditis elegans Hypothetical
           protein K07C11.10 protein.
          Length = 125

 Score = 28.7 bits (61), Expect = 6.3
 Identities = 18/47 (38%), Positives = 25/47 (53%)
 Frame = -1

Query: 426 LERTTYTELRYLQREL*ESATLPEGRKADRYPVSGRVGTGERXEGAS 286
           L+  T  +L  +QRE  E   +PEG+KA R P S    + +  EG S
Sbjct: 66  LKTITTQKLEKMQREQMERLQVPEGQKA-RTPESAEAESPKSNEGPS 111


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,291,482
Number of Sequences: 27780
Number of extensions: 370192
Number of successful extensions: 875
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 853
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 875
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2423194158
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)