Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP06_F_L03
         (912 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC7D4.15c |ost4||oligosaccharyltransferase subunit Ost4 |Schiz...    34   0.024
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    31   0.23 
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    29   1.2  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    27   3.7  
SPAC869.10c |||proline specific permease |Schizosaccharomyces po...    27   3.7  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    27   4.9  

>SPAC7D4.15c |ost4||oligosaccharyltransferase subunit Ost4
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 32

 Score = 34.3 bits (75), Expect = 0.024
 Identities = 13/28 (46%), Positives = 20/28 (71%)
 Frame = +3

Query: 144 ITDIQLAVFSNILGVSIFLLVILYHYIN 227
           +TD+QL       G+S+ LL+ILYHY++
Sbjct: 1   MTDVQLQNIVTTFGISMMLLIILYHYLS 28


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 31.1 bits (67), Expect = 0.23
 Identities = 14/30 (46%), Positives = 14/30 (46%)
 Frame = +1

Query: 781 PXGXGGGGXGXXXPXGGXXGFPXXXGGXPG 870
           P G GGG  G     GG  G P   GG PG
Sbjct: 237 PGGFGGGPGGFGGGLGGFGGGPGGFGGGPG 266



 Score = 27.1 bits (57), Expect = 3.7
 Identities = 20/60 (33%), Positives = 20/60 (33%), Gaps = 5/60 (8%)
 Frame = +1

Query: 706 PPPGERGVLXFGGPXSXSXPXKXXX-----PXGXGGGGXGXXXPXGGXXGFPXXXGGXPG 870
           PPPG  G   FGG                 P G  GG  G     GG  G     GG PG
Sbjct: 200 PPPGPGGFGGFGGFGGEGHHHGGHGGFGGGPGGFEGGPGGFGGGPGGFGGGLGGFGGGPG 259



 Score = 26.2 bits (55), Expect = 6.5
 Identities = 14/30 (46%), Positives = 14/30 (46%)
 Frame = +1

Query: 781 PXGXGGGGXGXXXPXGGXXGFPXXXGGXPG 870
           P G GGG  G     GG  G P   GG PG
Sbjct: 244 PGGFGGGLGGFGGGPGGFGGGPGGHGG-PG 272


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 15/31 (48%), Positives = 15/31 (48%), Gaps = 1/31 (3%)
 Frame = -2

Query: 869 PGXPPXFXGKPXXPPXGXXNPX-PPPPKPXG 780
           PG PP     P  PP G   P  PPPP P G
Sbjct: 6   PGNPP-----PPPPPPGFEPPSQPPPPPPPG 31


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 27.1 bits (57), Expect = 3.7
 Identities = 15/50 (30%), Positives = 15/50 (30%), Gaps = 1/50 (2%)
 Frame = -2

Query: 869 PGXPPXFXGKPXXPPX-GXXNPXPPPPKPXGXXXFXGXEXEXGPPKXKTP 723
           P   P   G P  PP  G     PPPP P       G      P     P
Sbjct: 752 PPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPPAVSAGGSRYYAPAPQAEP 801


>SPAC869.10c |||proline specific permease |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 552

 Score = 27.1 bits (57), Expect = 3.7
 Identities = 10/32 (31%), Positives = 19/32 (59%)
 Frame = -3

Query: 166 TASWMSVIIFRLDVLN*IKLNYFVLRFFWIRV 71
           TA W+++++F + VLN   + +F    FW  +
Sbjct: 156 TAGWIAILLFLVAVLNSFFVKWFGETEFWFAI 187


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 13/29 (44%), Positives = 13/29 (44%), Gaps = 1/29 (3%)
 Frame = -2

Query: 869 PGXPPXFXGKPXXPPXGXXNPXPPP-PKP 786
           P  PP   G P  PP     P PPP P P
Sbjct: 454 PIAPPLPAGMPAAPPLPPAAPAPPPAPAP 482


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,284,743
Number of Sequences: 5004
Number of extensions: 36241
Number of successful extensions: 108
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 65
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 90
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 462505890
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)