Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP06_F_L01
(950 letters)
Database: tribolium
336 sequences; 122,585 total letters
Searching.......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF506023-1|AAM46899.1| 76|Tribolium castaneum polyubiquitin pr... 108 5e-26
AF506022-1|AAM46898.1| 685|Tribolium castaneum polyubiquitin pr... 108 5e-26
AF506021-1|AAM46897.1| 64|Tribolium castaneum polyubiquitin pr... 97 2e-22
AF506020-1|AAM46896.1| 112|Tribolium castaneum polyubiquitin pr... 95 9e-22
AM292344-1|CAL23156.1| 291|Tribolium castaneum gustatory recept... 24 2.0
EF127810-1|ABL67947.1| 311|Tribolium castaneum nicotinic acetyl... 23 2.6
EF127809-1|ABL67946.1| 311|Tribolium castaneum nicotinic acetyl... 23 2.6
EF127808-1|ABL67945.1| 311|Tribolium castaneum nicotinic acetyl... 23 2.6
EF127807-1|ABL67944.1| 311|Tribolium castaneum nicotinic acetyl... 23 2.6
EF127806-1|ABL67943.1| 311|Tribolium castaneum nicotinic acetyl... 23 2.6
AY043292-1|AAK96031.1| 323|Tribolium castaneum homeodomain tran... 23 4.6
>AF506023-1|AAM46899.1| 76|Tribolium castaneum polyubiquitin
protein.
Length = 76
Score = 108 bits (260), Expect = 5e-26
Identities = 52/56 (92%), Positives = 53/56 (94%)
Frame = +1
Query: 154 LXVEPSDTIENVXAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQXESTLHLV 321
L VEPSDTIENV AKIQDKEGIPP+QQRLIFAGKQLEDGRTLSDYNIQ ESTLHLV
Sbjct: 15 LEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 70
>AF506022-1|AAM46898.1| 685|Tribolium castaneum polyubiquitin
protein.
Length = 685
Score = 108 bits (260), Expect = 5e-26
Identities = 52/56 (92%), Positives = 53/56 (94%)
Frame = +1
Query: 154 LXVEPSDTIENVXAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQXESTLHLV 321
L VEPSDTIENV AKIQDKEGIPP+QQRLIFAGKQLEDGRTLSDYNIQ ESTLHLV
Sbjct: 15 LEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 70
Score = 108 bits (260), Expect = 5e-26
Identities = 52/56 (92%), Positives = 53/56 (94%)
Frame = +1
Query: 154 LXVEPSDTIENVXAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQXESTLHLV 321
L VEPSDTIENV AKIQDKEGIPP+QQRLIFAGKQLEDGRTLSDYNIQ ESTLHLV
Sbjct: 91 LEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 146
Score = 108 bits (260), Expect = 5e-26
Identities = 52/56 (92%), Positives = 53/56 (94%)
Frame = +1
Query: 154 LXVEPSDTIENVXAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQXESTLHLV 321
L VEPSDTIENV AKIQDKEGIPP+QQRLIFAGKQLEDGRTLSDYNIQ ESTLHLV
Sbjct: 167 LEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 222
Score = 108 bits (260), Expect = 5e-26
Identities = 52/56 (92%), Positives = 53/56 (94%)
Frame = +1
Query: 154 LXVEPSDTIENVXAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQXESTLHLV 321
L VEPSDTIENV AKIQDKEGIPP+QQRLIFAGKQLEDGRTLSDYNIQ ESTLHLV
Sbjct: 243 LEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 298
Score = 108 bits (260), Expect = 5e-26
Identities = 52/56 (92%), Positives = 53/56 (94%)
Frame = +1
Query: 154 LXVEPSDTIENVXAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQXESTLHLV 321
L VEPSDTIENV AKIQDKEGIPP+QQRLIFAGKQLEDGRTLSDYNIQ ESTLHLV
Sbjct: 319 LEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 374
Score = 108 bits (260), Expect = 5e-26
Identities = 52/56 (92%), Positives = 53/56 (94%)
Frame = +1
Query: 154 LXVEPSDTIENVXAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQXESTLHLV 321
L VEPSDTIENV AKIQDKEGIPP+QQRLIFAGKQLEDGRTLSDYNIQ ESTLHLV
Sbjct: 471 LEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 526
Score = 108 bits (260), Expect = 5e-26
Identities = 52/56 (92%), Positives = 53/56 (94%)
Frame = +1
Query: 154 LXVEPSDTIENVXAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQXESTLHLV 321
L VEPSDTIENV AKIQDKEGIPP+QQRLIFAGKQLEDGRTLSDYNIQ ESTLHLV
Sbjct: 547 LEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 602
Score = 108 bits (260), Expect = 5e-26
Identities = 52/56 (92%), Positives = 53/56 (94%)
Frame = +1
Query: 154 LXVEPSDTIENVXAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQXESTLHLV 321
L VEPSDTIENV AKIQDKEGIPP+QQRLIFAGKQLEDGRTLSDYNIQ ESTLHLV
Sbjct: 623 LEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 678
Score = 106 bits (254), Expect = 3e-25
Identities = 51/56 (91%), Positives = 52/56 (92%)
Frame = +1
Query: 154 LXVEPSDTIENVXAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQXESTLHLV 321
L VEPSDTIENV AKIQDKEGIPP+QQR IFAGKQLEDGRTLSDYNIQ ESTLHLV
Sbjct: 395 LEVEPSDTIENVKAKIQDKEGIPPDQQRSIFAGKQLEDGRTLSDYNIQKESTLHLV 450
>AF506021-1|AAM46897.1| 64|Tribolium castaneum polyubiquitin
protein.
Length = 64
Score = 97.1 bits (231), Expect = 2e-22
Identities = 46/50 (92%), Positives = 47/50 (94%)
Frame = +1
Query: 154 LXVEPSDTIENVXAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQXE 303
L VEPSDTIENV AKIQDKEGIPP+QQRLIFAGKQLEDGRTLSDYNIQ E
Sbjct: 15 LEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKE 64
>AF506020-1|AAM46896.1| 112|Tribolium castaneum polyubiquitin
protein.
Length = 112
Score = 94.7 bits (225), Expect = 9e-22
Identities = 45/50 (90%), Positives = 46/50 (92%)
Frame = +1
Query: 154 LXVEPSDTIENVXAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQXE 303
L VEPSDTIENV AKIQDKEGIPP+QQR IFAGKQLEDGRTLSDYNIQ E
Sbjct: 63 LEVEPSDTIENVKAKIQDKEGIPPDQQRSIFAGKQLEDGRTLSDYNIQKE 112
Score = 86.2 bits (204), Expect = 3e-19
Identities = 40/42 (95%), Positives = 41/42 (97%)
Frame = +1
Query: 196 KIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQXESTLHLV 321
KIQDKEGIPP+QQRLIFAGKQLEDGRTLSDYNIQ ESTLHLV
Sbjct: 1 KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 42
>AM292344-1|CAL23156.1| 291|Tribolium castaneum gustatory receptor
candidate 23 protein.
Length = 291
Score = 23.8 bits (49), Expect = 2.0
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = -1
Query: 485 CSPVHSRRRRWILPFSSTL*NLRTASLTFFFLCLIF 378
C P S R + + FS+T L A +TF + L F
Sbjct: 253 CRPTFSAARFYGIDFSNTFLGLVGAVVTFLIVLLQF 288
>EF127810-1|ABL67947.1| 311|Tribolium castaneum nicotinic
acetylcholine receptor subunitalpha 6 transcript variant
5 protein.
Length = 311
Score = 23.4 bits (48), Expect = 2.6
Identities = 11/27 (40%), Positives = 14/27 (51%)
Frame = -3
Query: 588 GTYLFVVVFEDHRAVTLPAVVTVLHHR 508
GTY ++F +V L VV HHR
Sbjct: 275 GTYFNCIMFMVASSVVLTVVVLNYHHR 301
>EF127809-1|ABL67946.1| 311|Tribolium castaneum nicotinic
acetylcholine receptor subunitalpha 6 transcript variant
4 protein.
Length = 311
Score = 23.4 bits (48), Expect = 2.6
Identities = 11/27 (40%), Positives = 14/27 (51%)
Frame = -3
Query: 588 GTYLFVVVFEDHRAVTLPAVVTVLHHR 508
GTY ++F +V L VV HHR
Sbjct: 275 GTYFNCIMFMVASSVVLTVVVLNYHHR 301
>EF127808-1|ABL67945.1| 311|Tribolium castaneum nicotinic
acetylcholine receptor subunitalpha 6 transcript variant
3 protein.
Length = 311
Score = 23.4 bits (48), Expect = 2.6
Identities = 11/27 (40%), Positives = 14/27 (51%)
Frame = -3
Query: 588 GTYLFVVVFEDHRAVTLPAVVTVLHHR 508
GTY ++F +V L VV HHR
Sbjct: 275 GTYFNCIMFMVASSVVLTVVVLNYHHR 301
>EF127807-1|ABL67944.1| 311|Tribolium castaneum nicotinic
acetylcholine receptor subunitalpha 6 transcript variant
2 protein.
Length = 311
Score = 23.4 bits (48), Expect = 2.6
Identities = 11/27 (40%), Positives = 14/27 (51%)
Frame = -3
Query: 588 GTYLFVVVFEDHRAVTLPAVVTVLHHR 508
GTY ++F +V L VV HHR
Sbjct: 275 GTYFNCIMFMVASSVVLTVVVLNYHHR 301
>EF127806-1|ABL67943.1| 311|Tribolium castaneum nicotinic
acetylcholine receptor subunitalpha 6 transcript variant
1 protein.
Length = 311
Score = 23.4 bits (48), Expect = 2.6
Identities = 11/27 (40%), Positives = 14/27 (51%)
Frame = -3
Query: 588 GTYLFVVVFEDHRAVTLPAVVTVLHHR 508
GTY ++F +V L VV HHR
Sbjct: 275 GTYFNCIMFMVASSVVLTVVVLNYHHR 301
>AY043292-1|AAK96031.1| 323|Tribolium castaneum homeodomain
transcription factor Prothoraxlessprotein.
Length = 323
Score = 22.6 bits (46), Expect = 4.6
Identities = 9/20 (45%), Positives = 9/20 (45%)
Frame = -2
Query: 337 HHEASTPGGGWIPSGYCSPR 278
HH P GG P G PR
Sbjct: 63 HHYGGPPSGGQPPQGMPYPR 82
Database: tribolium
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 122,585
Number of sequences in database: 336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 148,418
Number of Sequences: 336
Number of extensions: 2608
Number of successful extensions: 30
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 30
length of database: 122,585
effective HSP length: 57
effective length of database: 103,433
effective search space used: 26789147
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -