Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP06_F_L01
(950 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC6G10.11c |ubi3||ribosomal ubiquitin fusion protein Ubi3|Schi... 164 2e-41
SPAC589.10c |||ribomal-ubiquitin fusion protein Ubi5|Schizosacch... 164 2e-41
SPAC1805.12c |uep1|ubi2|ribosomal-ubiquitin fusion protein Ubi2|... 103 5e-23
SPAC11G7.04 |ubi1||ribosomal-ubiquitin fusion protein Ubi1|Schiz... 103 5e-23
SPBC337.08c |ubi4||ubiquitin|Schizosaccharomyces pombe|chr 2|||M... 103 5e-23
SPBC12D12.08c |ned8|nedd8, ubl1, SPBC24C6.01c|ubiquitin-like pro... 66 5e-12
SPAC26A3.16 |dph1|ucp5|UBA domain protein Dph1|Schizosaccharomyc... 36 0.008
SPBC2D10.12 |rhp23||Rad23 homolog Rhp23|Schizosaccharomyces pomb... 36 0.011
SPAC6G9.08 |ubp6||ubiquitin C-terminal hydrolase Ubp6|Schizosacc... 35 0.015
SPBC1718.06 |msp1|mgm1|mitochondrial GTPase Msp1|Schizosaccharom... 28 1.7
SPAC29B12.06c |rcd1||RNA-binding protein Rcd1 |Schizosaccharomyc... 27 5.1
>SPAC6G10.11c |ubi3||ribosomal ubiquitin fusion protein
Ubi3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 150
Score = 164 bits (398), Expect = 2e-41
Identities = 80/134 (59%), Positives = 94/134 (70%)
Frame = +1
Query: 154 LXVEPSDTIENVXAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQXESTLHLVXXXX 333
L VE SDTI+NV +KIQDKEGIPP+QQRLIFAGKQLEDGRTLSDYNIQ ESTLHLV
Sbjct: 15 LEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR 74
Query: 334 XXXXXXXXXNYSTPRXXXXXXXXXXLAVLRFYKVDENGKIHRLRRECTGEQCGAGVFMAV 513
Y+TP+ LAVL++YKV+++G + RLRREC CGA FMA
Sbjct: 75 GGGKKRKKKTYTTPKKIKHKHKKVELAVLKYYKVEDDGSVKRLRREC--PNCGASTFMAN 132
Query: 514 MEDRHYCGKCHSTM 555
+DR YCG+CH T+
Sbjct: 133 HKDRLYCGRCHLTL 146
>SPAC589.10c |||ribomal-ubiquitin fusion protein
Ubi5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 150
Score = 164 bits (398), Expect = 2e-41
Identities = 80/134 (59%), Positives = 94/134 (70%)
Frame = +1
Query: 154 LXVEPSDTIENVXAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQXESTLHLVXXXX 333
L VE SDTI+NV +KIQDKEGIPP+QQRLIFAGKQLEDGRTLSDYNIQ ESTLHLV
Sbjct: 15 LEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR 74
Query: 334 XXXXXXXXXNYSTPRXXXXXXXXXXLAVLRFYKVDENGKIHRLRRECTGEQCGAGVFMAV 513
Y+TP+ LAVL++YKV+++G + RLRREC CGA FMA
Sbjct: 75 GGGKKRKKKTYTTPKKIKHKHKKVELAVLKYYKVEDDGSVKRLRREC--PNCGASTFMAN 132
Query: 514 MEDRHYCGKCHSTM 555
+DR YCG+CH T+
Sbjct: 133 HKDRLYCGRCHLTL 146
>SPAC1805.12c |uep1|ubi2|ribosomal-ubiquitin fusion protein
Ubi2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 128
Score = 103 bits (246), Expect = 5e-23
Identities = 49/56 (87%), Positives = 52/56 (92%)
Frame = +1
Query: 154 LXVEPSDTIENVXAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQXESTLHLV 321
L VE SDTI+NV +KIQDKEGIPP+QQRLIFAGKQLEDGRTLSDYNIQ ESTLHLV
Sbjct: 15 LEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 70
>SPAC11G7.04 |ubi1||ribosomal-ubiquitin fusion protein
Ubi1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 128
Score = 103 bits (246), Expect = 5e-23
Identities = 49/56 (87%), Positives = 52/56 (92%)
Frame = +1
Query: 154 LXVEPSDTIENVXAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQXESTLHLV 321
L VE SDTI+NV +KIQDKEGIPP+QQRLIFAGKQLEDGRTLSDYNIQ ESTLHLV
Sbjct: 15 LEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 70
>SPBC337.08c |ubi4||ubiquitin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 382
Score = 103 bits (246), Expect = 5e-23
Identities = 49/56 (87%), Positives = 52/56 (92%)
Frame = +1
Query: 154 LXVEPSDTIENVXAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQXESTLHLV 321
L VE SDTI+NV +KIQDKEGIPP+QQRLIFAGKQLEDGRTLSDYNIQ ESTLHLV
Sbjct: 15 LEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 70
Score = 103 bits (246), Expect = 5e-23
Identities = 49/56 (87%), Positives = 52/56 (92%)
Frame = +1
Query: 154 LXVEPSDTIENVXAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQXESTLHLV 321
L VE SDTI+NV +KIQDKEGIPP+QQRLIFAGKQLEDGRTLSDYNIQ ESTLHLV
Sbjct: 91 LEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 146
Score = 103 bits (246), Expect = 5e-23
Identities = 49/56 (87%), Positives = 52/56 (92%)
Frame = +1
Query: 154 LXVEPSDTIENVXAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQXESTLHLV 321
L VE SDTI+NV +KIQDKEGIPP+QQRLIFAGKQLEDGRTLSDYNIQ ESTLHLV
Sbjct: 167 LEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 222
Score = 103 bits (246), Expect = 5e-23
Identities = 49/56 (87%), Positives = 52/56 (92%)
Frame = +1
Query: 154 LXVEPSDTIENVXAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQXESTLHLV 321
L VE SDTI+NV +KIQDKEGIPP+QQRLIFAGKQLEDGRTLSDYNIQ ESTLHLV
Sbjct: 243 LEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 298
Score = 103 bits (246), Expect = 5e-23
Identities = 49/56 (87%), Positives = 52/56 (92%)
Frame = +1
Query: 154 LXVEPSDTIENVXAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQXESTLHLV 321
L VE SDTI+NV +KIQDKEGIPP+QQRLIFAGKQLEDGRTLSDYNIQ ESTLHLV
Sbjct: 319 LEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 374
>SPBC12D12.08c |ned8|nedd8, ubl1, SPBC24C6.01c|ubiquitin-like
protein modifier Ned8|Schizosaccharomyces pombe|chr
2|||Manual
Length = 78
Score = 66.5 bits (155), Expect = 5e-12
Identities = 25/56 (44%), Positives = 41/56 (73%)
Frame = +1
Query: 154 LXVEPSDTIENVXAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQXESTLHLV 321
L ++P+D + + ++++KEGIPP+QQRLI+AGKQ+ D + Y+++ S LHLV
Sbjct: 15 LDIDPNDKVSRIKERVEEKEGIPPSQQRLIYAGKQMADDKNAESYHLEGGSVLHLV 70
>SPAC26A3.16 |dph1|ucp5|UBA domain protein Dph1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 354
Score = 35.9 bits (79), Expect = 0.008
Identities = 20/55 (36%), Positives = 32/55 (58%), Gaps = 6/55 (10%)
Frame = +1
Query: 175 TIENVXAKIQDKEGIPP------NQQRLIFAGKQLEDGRTLSDYNIQXESTLHLV 321
T+++ + + KE I P +QRLI+AG+ L+D +L Y IQ ++HLV
Sbjct: 19 TVDSESSVLALKEAIAPVADIEKERQRLIYAGRVLKDEESLKTYKIQDGHSIHLV 73
>SPBC2D10.12 |rhp23||Rad23 homolog Rhp23|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 368
Score = 35.5 bits (78), Expect = 0.011
Identities = 16/46 (34%), Positives = 30/46 (65%), Gaps = 1/46 (2%)
Frame = +1
Query: 169 SDT-IENVXAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQXE 303
+DT I + KIQ ++ +Q+LI++G+ L D +T+ +YNI+ +
Sbjct: 20 ADTKISELKEKIQTQQNYEVERQKLIYSGRILADDKTVGEYNIKEQ 65
>SPAC6G9.08 |ubp6||ubiquitin C-terminal hydrolase
Ubp6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 467
Score = 35.1 bits (77), Expect = 0.015
Identities = 16/53 (30%), Positives = 29/53 (54%)
Frame = +1
Query: 154 LXVEPSDTIENVXAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQXESTL 312
L +EP++T + ++ +PP +Q++I G QL+D L I+ +TL
Sbjct: 15 LEIEPNETGSTLKHQLYSLTQVPPERQKVIVKGGQLKDDVLLGSVGIKPNATL 67
>SPBC1718.06 |msp1|mgm1|mitochondrial GTPase
Msp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 903
Score = 28.3 bits (60), Expect = 1.7
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = -2
Query: 301 PSGYCSPRGYVHLPAAFQRRSTSVDWEGF 215
PS + PRG V+ P+ +RR + + GF
Sbjct: 17 PSSFLKPRGLVYRPSQIRRRVSLLSLSGF 45
>SPAC29B12.06c |rcd1||RNA-binding protein Rcd1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 283
Score = 26.6 bits (56), Expect = 5.1
Identities = 14/54 (25%), Positives = 24/54 (44%), Gaps = 1/54 (1%)
Frame = +1
Query: 415 VLRFY-KVDENGKIHRLRRECTGEQCGAGVFMAVMEDRHYCGKCHSTMVFKDDD 573
V+R Y ++ +N + R C E F V++D H KC + ++ D
Sbjct: 224 VIRCYLRLSDNPRAREALRHCLPEPLRDATFAQVLKDDHNTKKCLAQLLINLSD 277
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,550,016
Number of Sequences: 5004
Number of extensions: 41406
Number of successful extensions: 94
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 87
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 92
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 485316198
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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