Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP06_F_K24
         (933 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1 |Schizosaccharo...    30   0.41 
SPBC646.15c |||Pex16 family protein|Schizosaccharomyces pombe|ch...    26   6.6  
SPAC4D7.03 |pop2|sud1|F-box/WD repeat protein Pop2|Schizosacchar...    26   8.7  

>SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1183

 Score = 30.3 bits (65), Expect = 0.41
 Identities = 20/81 (24%), Positives = 34/81 (41%)
 Frame = +2

Query: 284 GFPPGVAEELVIKVLRTCDPKNVKEPHKHTDLNNEIMCSTVAQEVEVIASEDTSADLEAS 463
           GF  G  E  +   ++   PK  K       LN +    +  ++     SE+ S D + S
Sbjct: 191 GFSTGTNESEITPNIKVLPPKKKKNASWGKMLNEDPEYDSAEEDYLSTDSEEFSEDSDNS 250

Query: 464 GEQDVLTSEHQVRKAVSSEPE 526
            E++  T+E   + A  + PE
Sbjct: 251 SEENKDTNEPSTKDAEKTVPE 271


>SPBC646.15c |||Pex16 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 376

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 15/52 (28%), Positives = 21/52 (40%)
 Frame = -1

Query: 753 LXWTXGGSLTIKSPVCXXXXNXPGFIATFRSXEDCIFGGXXTVTSRSIRVXP 598
           + WT GG L + +PV     N   FI   +   +    G   V   S +V P
Sbjct: 133 IMWTTGGDLPLSNPVLQRDFNVKTFIHLHKKYSN---SGSAVVLKNSKKVVP 181


>SPAC4D7.03 |pop2|sud1|F-box/WD repeat protein
           Pop2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 703

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 18/49 (36%), Positives = 24/49 (48%)
 Frame = -2

Query: 515 SKLLSLLDVQMLGHLVPHLPRGPQRYLH*QLLRPLEQQSST*SRCLNQC 369
           S+ L  L++Q +      LP G Q Y   QLLR   +QS      LN+C
Sbjct: 184 SEDLEDLNLQSIVQTFEDLPEGIQSYAFFQLLRSCNRQSM--RLLLNEC 230


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,921,959
Number of Sequences: 5004
Number of extensions: 52571
Number of successful extensions: 139
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 139
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 473333082
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)