Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP06_F_K24
         (933 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1332 + 25854171-25854695                                         31   1.7  
08_02_1176 + 24931728-24931877,24933175-24933275,24934410-249347...    30   2.3  

>07_03_1332 + 25854171-25854695
          Length = 174

 Score = 30.7 bits (66), Expect = 1.7
 Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = +2

Query: 257 VPDGQYENIGFP-PGVAEELVIKVLRTCDPKNVKEPH 364
           V DG   + GFP P V  + + +V++ CD    KEPH
Sbjct: 52  VDDGGCVDKGFPLPNVDSKTLARVIQYCDEHGNKEPH 88


>08_02_1176 +
           24931728-24931877,24933175-24933275,24934410-24934788,
           24935509-24936354,24936555-24936642,24936947-24937039,
           24937221-24937318,24937364-24937470,24938266-24938353,
           24938748-24939005
          Length = 735

 Score = 30.3 bits (65), Expect = 2.3
 Identities = 22/71 (30%), Positives = 30/71 (42%)
 Frame = +2

Query: 368 HTDLNNEIMCSTVAQEVEVIASEDTSADLEASGEQDVLTSEHQVRKAVSSEPEXYSLRDT 547
           H  +N  +   T  QE   + ++D  A  E  GEQ   +SE Q+R    + PE  S   T
Sbjct: 88  HLSVNLHLYVQT--QEQLQVDNKDDEAPNELPGEQK--SSELQLRSKDQTHPECVSEPST 143

Query: 548 IRKXAXATWSG 580
            R      W G
Sbjct: 144 TRSRTKRDWKG 154


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,902,577
Number of Sequences: 37544
Number of extensions: 330594
Number of successful extensions: 712
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 702
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 712
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2670960720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)