Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP06_F_K24
         (933 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC035014-1|AAH35014.1|  361|Homo sapiens NudC domain containing ...    56   2e-07
AB028991-1|BAA83020.1|  354|Homo sapiens KIAA1068 protein protein.     56   2e-07
X75304-1|CAA53052.1| 3259|Homo sapiens giantin protein.                33   1.1  
D25542-1|BAA05025.1| 3225|Homo sapiens golgi antigen gcp372 prot...    33   1.1  
AK024334-1|BAB14889.1|  276|Homo sapiens protein ( Homo sapiens ...    31   6.0  

>BC035014-1|AAH35014.1|  361|Homo sapiens NudC domain containing 3
           protein.
          Length = 361

 Score = 56.0 bits (129), Expect = 2e-07
 Identities = 26/62 (41%), Positives = 38/62 (61%)
 Frame = +2

Query: 155 YDDILSNILVNEKSILGFLSAIFNFLARRTDFYYVPDGQYENIGFPPGVAEELVIKVLRT 334
           YD  L  IL +  ++  FL  +F FL R+TDFY +     + +GFPPG A+ LV++V +T
Sbjct: 9   YDQALLGILQHVGNVQDFLRVLFGFLYRKTDFYRLLRHPSDRMGFPPGAAQALVLQVFKT 68

Query: 335 CD 340
            D
Sbjct: 69  FD 70


>AB028991-1|BAA83020.1|  354|Homo sapiens KIAA1068 protein protein.
          Length = 354

 Score = 56.0 bits (129), Expect = 2e-07
 Identities = 26/62 (41%), Positives = 38/62 (61%)
 Frame = +2

Query: 155 YDDILSNILVNEKSILGFLSAIFNFLARRTDFYYVPDGQYENIGFPPGVAEELVIKVLRT 334
           YD  L  IL +  ++  FL  +F FL R+TDFY +     + +GFPPG A+ LV++V +T
Sbjct: 2   YDQALLGILQHVGNVQDFLRVLFGFLYRKTDFYRLLRHPSDRMGFPPGAAQALVLQVFKT 61

Query: 335 CD 340
            D
Sbjct: 62  FD 63


>X75304-1|CAA53052.1| 3259|Homo sapiens giantin protein.
          Length = 3259

 Score = 33.5 bits (73), Expect = 1.1
 Identities = 21/81 (25%), Positives = 37/81 (45%)
 Frame = +2

Query: 278  NIGFPPGVAEELVIKVLRTCDPKNVKEPHKHTDLNNEIMCSTVAQEVEVIASEDTSADLE 457
            NI   PG  +E    V R  DP+ ++EP +      + +C+T  +  E+    +   D  
Sbjct: 3106 NIDVAPGAPQEKN-GVHRKSDPEELREPQQSFSEAQQQLCNTRQEVNELRKLLEEERDQR 3164

Query: 458  ASGEQDVLTSEHQVRKAVSSE 520
             + E  +  +E Q+R+   SE
Sbjct: 3165 VAAENALSVAEEQIRRLEHSE 3185


>D25542-1|BAA05025.1| 3225|Homo sapiens golgi antigen gcp372 protein.
          Length = 3225

 Score = 33.5 bits (73), Expect = 1.1
 Identities = 21/81 (25%), Positives = 37/81 (45%)
 Frame = +2

Query: 278  NIGFPPGVAEELVIKVLRTCDPKNVKEPHKHTDLNNEIMCSTVAQEVEVIASEDTSADLE 457
            NI   PG  +E    V R  DP+ ++EP +      + +C+T  +  E+    +   D  
Sbjct: 3072 NIDVAPGAPQEKN-GVHRKSDPEELREPQQSFSEAQQQLCNTRQEVNELRKLLEEERDQR 3130

Query: 458  ASGEQDVLTSEHQVRKAVSSE 520
             + E  +  +E Q+R+   SE
Sbjct: 3131 VAAENALSVAEEQIRRLEHSE 3151


>AK024334-1|BAB14889.1|  276|Homo sapiens protein ( Homo sapiens
           cDNA FLJ14272 fis, clone PLACE1004793, weakly similar to
           RETROVIRUS-RELATED ENV POLYPROTEIN. ).
          Length = 276

 Score = 31.1 bits (67), Expect = 6.0
 Identities = 12/41 (29%), Positives = 18/41 (43%)
 Frame = +3

Query: 531 TASVIPYEXKRXLHGADRXNTSWAQLLWIWM*LXNXXQIYN 653
           T  ++ +  K  L G +    SW +L W W    N   +YN
Sbjct: 3   TGDIVDWGPKGQLDGKEENQKSWHKLCWHWWQAFNASSLYN 43


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 105,815,797
Number of Sequences: 237096
Number of extensions: 1853726
Number of successful extensions: 4244
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 4166
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4244
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 12214492840
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)