Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP06_F_K24
         (933 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z78018-1|CAB01445.1|  126|Caenorhabditis elegans Hypothetical pr...    30   2.7  
U23484-14|AAC46763.1|  194|Caenorhabditis elegans Hypothetical p...    29   4.8  
U64598-2|AAK39214.2|  558|Caenorhabditis elegans Hypothetical pr...    28   8.3  

>Z78018-1|CAB01445.1|  126|Caenorhabditis elegans Hypothetical
           protein W07G4.1 protein.
          Length = 126

 Score = 29.9 bits (64), Expect = 2.7
 Identities = 13/42 (30%), Positives = 23/42 (54%)
 Frame = +1

Query: 55  FHLCNELILYYISNVEEFIKNSVKNVIRERI*PIRRYFIKYF 180
           F +C  ++   +  +E FIKN ++  I + + PI +YF   F
Sbjct: 5   FRVCKNIVFLSLRILETFIKNILEISIFDELMPIFQYFYSIF 46


>U23484-14|AAC46763.1|  194|Caenorhabditis elegans Hypothetical
           protein EEED8.3 protein.
          Length = 194

 Score = 29.1 bits (62), Expect = 4.8
 Identities = 14/45 (31%), Positives = 22/45 (48%)
 Frame = +2

Query: 332 TCDPKNVKEPHKHTDLNNEIMCSTVAQEVEVIASEDTSADLEASG 466
           TC   N  + H HTDL  + +  T+ +  + IA +D +    A G
Sbjct: 103 TCYKMNGNQLHVHTDLLGKSLIPTIFEFDKPIARDDNAVSTHAEG 147


>U64598-2|AAK39214.2|  558|Caenorhabditis elegans Hypothetical
           protein C52B9.4 protein.
          Length = 558

 Score = 28.3 bits (60), Expect = 8.3
 Identities = 11/35 (31%), Positives = 19/35 (54%)
 Frame = +2

Query: 242 TDFYYVPDGQYENIGFPPGVAEELVIKVLRTCDPK 346
           T+   +  G+Y+ IG P       V+++  TCDP+
Sbjct: 25  TEVVEIQQGKYQLIGVPQAALNGTVVQLEFTCDPE 59


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,328,286
Number of Sequences: 27780
Number of extensions: 304531
Number of successful extensions: 738
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 660
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 738
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2402214122
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)