Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP06_F_K20
(822 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF025467-2|AAN65301.1| 505|Caenorhabditis elegans Hypothetical ... 31 0.75
AF025467-1|AAB71039.2| 528|Caenorhabditis elegans Hypothetical ... 31 0.75
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 31 1.00
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 31 1.00
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 31 1.00
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 29 3.0
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 29 3.0
Z29443-8|CAE45742.1| 455|Caenorhabditis elegans Hypothetical pr... 29 5.3
Z29443-7|CAA82571.2| 497|Caenorhabditis elegans Hypothetical pr... 29 5.3
AL132860-21|CAB60518.2| 759|Caenorhabditis elegans Hypothetical... 29 5.3
AF057032-1|AAC13567.1| 759|Caenorhabditis elegans DNA topoisome... 29 5.3
>AF025467-2|AAN65301.1| 505|Caenorhabditis elegans Hypothetical
protein R148.5b protein.
Length = 505
Score = 31.5 bits (68), Expect = 0.75
Identities = 23/65 (35%), Positives = 23/65 (35%)
Frame = -3
Query: 586 FFCPPPXXKXPPGXXFFXXRGGGXPPVFF*XPPXKKXXXGXXGGXFFGGETXXPPQXXGG 407
FF PPP PP F G G PP F PP G G P GG
Sbjct: 295 FFPPPPRGHFPPPPPHF--MGRGMPPPFM--PPPPHFGMGPPRGFM---PPPHPMMFRGG 347
Query: 406 XPPPF 392
PPF
Sbjct: 348 PYPPF 352
>AF025467-1|AAB71039.2| 528|Caenorhabditis elegans Hypothetical
protein R148.5a protein.
Length = 528
Score = 31.5 bits (68), Expect = 0.75
Identities = 23/65 (35%), Positives = 23/65 (35%)
Frame = -3
Query: 586 FFCPPPXXKXPPGXXFFXXRGGGXPPVFF*XPPXKKXXXGXXGGXFFGGETXXPPQXXGG 407
FF PPP PP F G G PP F PP G G P GG
Sbjct: 295 FFPPPPRGHFPPPPPHF--MGRGMPPPFM--PPPPHFGMGPPRGFM---PPPHPMMFRGG 347
Query: 406 XPPPF 392
PPF
Sbjct: 348 PYPPF 352
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 31.1 bits (67), Expect = 1.00
Identities = 22/69 (31%), Positives = 22/69 (31%)
Frame = +1
Query: 433 GFPXQKKXPPXXPXXFFXXGGXKKKPGGXPXPXXKKKXPPGGXXGXGGGKKXPXPXXXXX 612
G P PP P GG GG P P PPGG GG P P
Sbjct: 718 GLPPITGGPPPPPPP----GGLPPITGGPPPPP-----PPGGLPPISGGPPPPPPPPGGC 768
Query: 613 PXKKXXXPP 639
P PP
Sbjct: 769 PPPPPPPPP 777
Score = 29.1 bits (62), Expect = 4.0
Identities = 17/52 (32%), Positives = 17/52 (32%), Gaps = 1/52 (1%)
Frame = +1
Query: 490 GGXKKKPGGXPXP-XXKKKXPPGGXXGXGGGKKXPXPXXXXXPXKKXXXPPP 642
GG PG P PPGG GG P P P PPP
Sbjct: 711 GGPPPPPGLPPITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPP 762
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 31.1 bits (67), Expect = 1.00
Identities = 22/69 (31%), Positives = 22/69 (31%)
Frame = +1
Query: 433 GFPXQKKXPPXXPXXFFXXGGXKKKPGGXPXPXXKKKXPPGGXXGXGGGKKXPXPXXXXX 612
G P PP P GG GG P P PPGG GG P P
Sbjct: 718 GLPPITGGPPPPPPP----GGLPPITGGPPPPP-----PPGGLPPISGGPPPPPPPPGGC 768
Query: 613 PXKKXXXPP 639
P PP
Sbjct: 769 PPPPPPPPP 777
Score = 29.1 bits (62), Expect = 4.0
Identities = 17/52 (32%), Positives = 17/52 (32%), Gaps = 1/52 (1%)
Frame = +1
Query: 490 GGXKKKPGGXPXP-XXKKKXPPGGXXGXGGGKKXPXPXXXXXPXKKXXXPPP 642
GG PG P PPGG GG P P P PPP
Sbjct: 711 GGPPPPPGLPPITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPP 762
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 31.1 bits (67), Expect = 1.00
Identities = 22/69 (31%), Positives = 22/69 (31%)
Frame = +1
Query: 433 GFPXQKKXPPXXPXXFFXXGGXKKKPGGXPXPXXKKKXPPGGXXGXGGGKKXPXPXXXXX 612
G P PP P GG GG P P PPGG GG P P
Sbjct: 301 GLPPITGGPPPPPPP----GGLPPITGGPPPPP-----PPGGLPPISGGPPPPPPPPGGC 351
Query: 613 PXKKXXXPP 639
P PP
Sbjct: 352 PPPPPPPPP 360
Score = 29.1 bits (62), Expect = 4.0
Identities = 17/52 (32%), Positives = 17/52 (32%), Gaps = 1/52 (1%)
Frame = +1
Query: 490 GGXKKKPGGXPXP-XXKKKXPPGGXXGXGGGKKXPXPXXXXXPXKKXXXPPP 642
GG PG P PPGG GG P P P PPP
Sbjct: 294 GGPPPPPGLPPITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPP 345
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical
protein C08B11.5 protein.
Length = 388
Score = 29.5 bits (63), Expect = 3.0
Identities = 20/68 (29%), Positives = 21/68 (30%)
Frame = +1
Query: 439 PXQKKXPPXXPXXFFXXGGXKKKPGGXPXPXXKKKXPPGGXXGXGGGKKXPXPXXXXXPX 618
P PP P G PG P P + PPG GG P P P
Sbjct: 291 PSSGMWPPPPPPPPGRTPGPPGMPGMPPPPPPSRFGPPG-----MGGMPPPPPPGMRYPG 345
Query: 619 KKXXXPPP 642
PPP
Sbjct: 346 GMPPPPPP 353
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA
binding protein protein.
Length = 398
Score = 29.5 bits (63), Expect = 3.0
Identities = 20/68 (29%), Positives = 21/68 (30%)
Frame = +1
Query: 439 PXQKKXPPXXPXXFFXXGGXKKKPGGXPXPXXKKKXPPGGXXGXGGGKKXPXPXXXXXPX 618
P PP P G PG P P + PPG GG P P P
Sbjct: 301 PSSGMWPPPPPPPPGRTPGPPGMPGMPPPPPPSRFGPPG-----MGGMPPPPPPGMRYPG 355
Query: 619 KKXXXPPP 642
PPP
Sbjct: 356 GMPPPPPP 363
>Z29443-8|CAE45742.1| 455|Caenorhabditis elegans Hypothetical
protein T07C4.9b protein.
Length = 455
Score = 28.7 bits (61), Expect = 5.3
Identities = 24/97 (24%), Positives = 28/97 (28%), Gaps = 1/97 (1%)
Frame = +1
Query: 436 FPXQKKXPPXXPXXFFXXGGXKKKPGGXPXPXXKKKXPPGGXXGXGGGK-KXPXPXXXXX 612
+P PP GG GG P P P G GG+ P P
Sbjct: 42 YPGGGGQPPYPGSNSNQGGGGYPGQGGAPYPGGSGGYPQAPQYGFSGGQGSAPQPNQGGY 101
Query: 613 PXKKXXXPPPXCXXXXXXGGXXNXGXXXFXXGGGXXP 723
P ++ PP GG G F G P
Sbjct: 102 PPQQQQYPP---QQGYQQGGQQQGGGGFFPNQGYGQP 135
>Z29443-7|CAA82571.2| 497|Caenorhabditis elegans Hypothetical
protein T07C4.9a protein.
Length = 497
Score = 28.7 bits (61), Expect = 5.3
Identities = 24/97 (24%), Positives = 28/97 (28%), Gaps = 1/97 (1%)
Frame = +1
Query: 436 FPXQKKXPPXXPXXFFXXGGXKKKPGGXPXPXXKKKXPPGGXXGXGGGK-KXPXPXXXXX 612
+P PP GG GG P P P G GG+ P P
Sbjct: 84 YPGGGGQPPYPGSNSNQGGGGYPGQGGAPYPGGSGGYPQAPQYGFSGGQGSAPQPNQGGY 143
Query: 613 PXKKXXXPPPXCXXXXXXGGXXNXGXXXFXXGGGXXP 723
P ++ PP GG G F G P
Sbjct: 144 PPQQQQYPP---QQGYQQGGQQQGGGGFFPNQGYGQP 177
>AL132860-21|CAB60518.2| 759|Caenorhabditis elegans Hypothetical
protein Y56A3A.27 protein.
Length = 759
Score = 28.7 bits (61), Expect = 5.3
Identities = 15/43 (34%), Positives = 15/43 (34%)
Frame = +1
Query: 511 GGXPXPXXKKKXPPGGXXGXGGGKKXPXPXXXXXPXKKXXXPP 639
GG P PP G G GGG P P K PP
Sbjct: 615 GGGPGGPGGGGGPPRGPGGGGGGGPTGPPAPPKPPAKPRGRPP 657
>AF057032-1|AAC13567.1| 759|Caenorhabditis elegans DNA
topoisomerase III protein.
Length = 759
Score = 28.7 bits (61), Expect = 5.3
Identities = 15/43 (34%), Positives = 15/43 (34%)
Frame = +1
Query: 511 GGXPXPXXKKKXPPGGXXGXGGGKKXPXPXXXXXPXKKXXXPP 639
GG P PP G G GGG P P K PP
Sbjct: 615 GGGPGGPGGGGGPPRGPGGGGGGGPTGPPAPPKPPAKPRGRPP 657
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,232,084
Number of Sequences: 27780
Number of extensions: 296634
Number of successful extensions: 593
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 369
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 550
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2029935014
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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