Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP06_F_K19
         (879 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC63.04 |mok14||alpha-1,3-glucan synthase Mok14|Schizosaccharo...    27   3.5  
SPAC1071.11 |||NADH-dependent flavin oxidoreductase |Schizosacch...    27   4.7  
SPCC1223.09 |||uricase |Schizosaccharomyces pombe|chr 3|||Manual       26   6.1  
SPCC1494.06c |||ATP-dependent RNA helicase Dbp9 |Schizosaccharom...    26   8.1  
SPAC1071.12c |stp1|SPAC926.01c|low molecular weight phosphotyros...    26   8.1  

>SPCC63.04 |mok14||alpha-1,3-glucan synthase Mok14|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1369

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 18/53 (33%), Positives = 28/53 (52%)
 Frame = -3

Query: 577  IDLLKLSF*HLYHTSKSRLSIKFKILLKLTYQNRLHKKIIVIVFWNSNFVLLA 419
            +  L LSF  L+ T  SRL   +K+LL+      ++   +V   W  +FVLL+
Sbjct: 1077 VQQLWLSFLWLWGTLSSRLDYNYKVLLQ-----PINSVYVVAGVWPVSFVLLS 1124


>SPAC1071.11 |||NADH-dependent flavin oxidoreductase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 244

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 17/40 (42%), Positives = 21/40 (52%)
 Frame = -3

Query: 259 FH*LLRVHGQTV*LINGGRFLVTHRVPMSAVSSTPVVVIP 140
           F  L+R   Q V +I  G F   HR  M+A S TPV + P
Sbjct: 42  FRLLMRRFAQPVVIITSG-FADGHRAGMTASSFTPVSLTP 80


>SPCC1223.09 |||uricase |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 296

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = +2

Query: 209 TVYELDSLAVHTEELMEKYTPKSN 280
           TVYE+D  ++ T EL E YT   N
Sbjct: 32  TVYEMDVQSLLTGELEESYTKADN 55


>SPCC1494.06c |||ATP-dependent RNA helicase Dbp9
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 595

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
 Frame = +2

Query: 182 DAMRDKEPTTVYELDSLAVHTEELMEKYTPKSNKNYAIA--MDLLRLQYNLNF 334
           D M+D+E   V +   LA   ++  +K   K +K Y +A  +D   +   LNF
Sbjct: 349 DKMKDQENADVNDESILAAAKDKSKKKKRVKQDKEYGVARGLDFENVACVLNF 401


>SPAC1071.12c |stp1|SPAC926.01c|low molecular weight phosphotyrosine
           protein phosphatase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 156

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
 Frame = +2

Query: 200 EPTTVYELDSLAVHTEELMEKYTPKSNKN--YAIAMDLLRLQYNLN 331
           +P T+  L    +HT+ L  K +    KN  Y  AMD   L+ N+N
Sbjct: 56  DPRTLEVLKKNGIHTKHLARKLSTSDFKNFDYIFAMDSSNLR-NIN 100


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,299,896
Number of Sequences: 5004
Number of extensions: 69317
Number of successful extensions: 135
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 135
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 440481800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)