Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP06_F_K18
(983 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 36 0.012
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 33 0.047
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 32 0.11
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 30 0.44
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe... 29 1.0
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 26 7.1
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 26 9.4
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 26 9.4
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 35.5 bits (78), Expect = 0.012
Identities = 19/45 (42%), Positives = 19/45 (42%), Gaps = 1/45 (2%)
Frame = +3
Query: 762 TPQXPPXX-PPXXPPXXXPPPPPEXXSPXXXXXGTGGXPXXPPPP 893
TP P PP P PPPPP P G G P PPPP
Sbjct: 743 TPAPAPIPVPPPAPIMGGPPPPP----PPPGVAGAGPPPPPPPPP 783
Score = 31.5 bits (68), Expect = 0.19
Identities = 14/37 (37%), Positives = 14/37 (37%)
Frame = +3
Query: 786 PPXXPPXXXPPPPPEXXSPXXXXXGTGGXPXXPPPPG 896
PP P P P P GG P PPPPG
Sbjct: 733 PPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPG 769
Score = 29.1 bits (62), Expect = 1.0
Identities = 13/36 (36%), Positives = 13/36 (36%)
Frame = +3
Query: 786 PPXXPPXXXPPPPPEXXSPXXXXXGTGGXPXXPPPP 893
PP PP P P P G P PPPP
Sbjct: 732 PPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPP 767
Score = 27.5 bits (58), Expect = 3.1
Identities = 16/52 (30%), Positives = 17/52 (32%), Gaps = 4/52 (7%)
Frame = +3
Query: 750 TPXTTPQXPPXXPPXXPPXXXPPPPPEXXSPXXXXXGTG----GXPXXPPPP 893
+P P P P PPP P P G G P PPPP
Sbjct: 731 SPPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPP 782
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 33.5 bits (73), Expect = 0.047
Identities = 17/49 (34%), Positives = 18/49 (36%), Gaps = 2/49 (4%)
Frame = +3
Query: 753 PXTTPQXPPXX--PPXXPPXXXPPPPPEXXSPXXXXXGTGGXPXXPPPP 893
P +TP P PP PPPP P G P PPPP
Sbjct: 1686 PVSTPPVRPQSAAPPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPPPP 1734
Score = 27.9 bits (59), Expect = 2.3
Identities = 13/37 (35%), Positives = 15/37 (40%), Gaps = 1/37 (2%)
Frame = +3
Query: 753 PXTTPQXPPXXP-PXXPPXXXPPPPPEXXSPXXXXXG 860
P + P P P P PP PPP P +P G
Sbjct: 1711 PMSVPPPPSAPPMPAGPPSAPPPPLPASSAPSVPNPG 1747
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 32.3 bits (70), Expect = 0.11
Identities = 12/25 (48%), Positives = 12/25 (48%)
Frame = +3
Query: 753 PXTTPQXPPXXPPXXPPXXXPPPPP 827
P P PP P PP PPPPP
Sbjct: 5 PPGNPPPPPPPPGFEPPSQPPPPPP 29
Score = 27.9 bits (59), Expect = 2.3
Identities = 17/46 (36%), Positives = 17/46 (36%)
Frame = +3
Query: 774 PPXXPPXXPPXXXPPPPPEXXSPXXXXXGTGGXPXXPPPPGXXSNR 911
PP PP PPPPP P P PPPPG R
Sbjct: 5 PPGNPP-------PPPPPPGFEPP-------SQPPPPPPPGYVKKR 36
Score = 27.5 bits (58), Expect = 3.1
Identities = 14/28 (50%), Positives = 14/28 (50%), Gaps = 2/28 (7%)
Frame = +2
Query: 752 PXNHPPXTPXXPPRXXPPXXP--PPPTG 829
P N PP P PP PP P PPP G
Sbjct: 6 PGNPPPPPP--PPGFEPPSQPPPPPPPG 31
Score = 26.6 bits (56), Expect = 5.4
Identities = 12/25 (48%), Positives = 12/25 (48%)
Frame = +2
Query: 749 NPXNHPPXTPXXPPRXXPPXXPPPP 823
NP PP PP PP PPPP
Sbjct: 8 NPPPPPPPPGFEPPSQPPP--PPPP 30
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 30.3 bits (65), Expect = 0.44
Identities = 17/50 (34%), Positives = 17/50 (34%), Gaps = 3/50 (6%)
Frame = +3
Query: 753 PXTTPQXPPXXPPXXPPXXX---PPPPPEXXSPXXXXXGTGGXPXXPPPP 893
P P PP PP PP P PP S G P PP P
Sbjct: 421 PSLPPSAPPSLPPSAPPSLPMGAPAAPPLPPSAPIAPPLPAGMPAAPPLP 470
Score = 28.7 bits (61), Expect = 1.3
Identities = 18/54 (33%), Positives = 19/54 (35%), Gaps = 4/54 (7%)
Frame = +3
Query: 741 GXXTPXTTPQXPPXXPPXXPPXXXP----PPPPEXXSPXXXXXGTGGXPXXPPP 890
G T + P PP P PP P P PP P GT P PP
Sbjct: 222 GTPTSTSAPPIPPSIPSSRPPERVPSLSAPAPPPIPPP---SNGTVSSPPNSPP 272
Score = 27.9 bits (59), Expect = 2.3
Identities = 29/137 (21%), Positives = 30/137 (21%), Gaps = 2/137 (1%)
Frame = +3
Query: 489 PPXXPXRGPPXXXRGPXG--FPPPPXXXXXXXPXETGEXPXXKXXKKXXPPPXRKKXQXP 662
PP RG P G PPPP P + PPP R
Sbjct: 316 PPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGR--SAPPPPPPRSAPSTG 373
Query: 663 PXXXXXSQXXXXXXXXXXXXXXXXXXGXXTPXTTPQXPPXXPPXXPPXXXPPPPPEXXSP 842
S P PP P PP P P
Sbjct: 374 RQPPPLSSSRAVSNPPAPPPAIPGRSAPALPPLGNASRTSTPPVPTPPSLPPSAPPSLPP 433
Query: 843 XXXXXGTGGXPXXPPPP 893
G P PP P
Sbjct: 434 SAPPSLPMGAPAAPPLP 450
Score = 27.1 bits (57), Expect = 4.1
Identities = 15/54 (27%), Positives = 18/54 (33%)
Frame = -2
Query: 541 PXGPRXXXGGPRFGXXGGAXKMGPKXPNPFXFXGFXXXFFKXGXNXPPPPXPRN 380
P R G P G + P P P G + PPPP PR+
Sbjct: 315 PPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPPPPPRS 368
Score = 26.6 bits (56), Expect = 5.4
Identities = 13/34 (38%), Positives = 14/34 (41%), Gaps = 2/34 (5%)
Frame = +3
Query: 813 PPPPPEXXSPXXXXXGTGGX--PXXPPPPGXXSN 908
PPPPP + G G PPPP SN
Sbjct: 313 PPPPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSN 346
Score = 26.2 bits (55), Expect = 7.1
Identities = 12/36 (33%), Positives = 12/36 (33%)
Frame = +3
Query: 486 APPXXPXRGPPXXXRGPXGFPPPPXXXXXXXPXETG 593
APP P PP G PP P P G
Sbjct: 427 APPSLPPSAPPSLPMGAPAAPPLPPSAPIAPPLPAG 462
>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 273
Score = 29.1 bits (62), Expect = 1.0
Identities = 19/46 (41%), Positives = 19/46 (41%)
Frame = -2
Query: 889 GGGXXGXPPVPXXSXSGEXXSGGGGGXXXGGXXGGXXGGXWGVVXG 752
GGG G PP P G GG G GG GG GG G G
Sbjct: 194 GGGSGGPPPGP--GGFGGFGGFGGEGHHHGG-HGGFGGGPGGFEGG 236
Score = 28.3 bits (60), Expect = 1.8
Identities = 17/42 (40%), Positives = 17/42 (40%)
Frame = -2
Query: 889 GGGXXGXPPVPXXSXSGEXXSGGGGGXXXGGXXGGXXGGXWG 764
GGG G P G GGG G GG GG GG G
Sbjct: 227 GGGPGGFEGGPGGFGGGPGGFGGGLGG-FGGGPGGFGGGPGG 267
Score = 27.9 bits (59), Expect = 2.3
Identities = 18/49 (36%), Positives = 19/49 (38%)
Frame = -2
Query: 895 PGGGGXXGXPPVPXXSXSGEXXSGGGGGXXXGGXXGGXXGGXWGVVXGV 749
PGG G G G GGG G GG GG GG G G+
Sbjct: 204 PGGFGGFGGFGGEGHHHGGHGGFGGGPGGFEGG-PGGFGGGPGGFGGGL 251
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 26.2 bits (55), Expect = 7.1
Identities = 13/47 (27%), Positives = 16/47 (34%), Gaps = 1/47 (2%)
Frame = +3
Query: 753 PXTTPQXPPXXPPXXPPXXXP-PPPPEXXSPXXXXXGTGGXPXXPPP 890
P +P P P PP PPP + +P P PP
Sbjct: 150 PPPSPASAPPIPSKAPPIPSSLPPPAQPAAPVKSPPSAPSLPSAVPP 196
Score = 26.2 bits (55), Expect = 7.1
Identities = 12/28 (42%), Positives = 12/28 (42%), Gaps = 2/28 (7%)
Frame = +2
Query: 746 ANPXNHPPXTPXXPPR--XXPPXXPPPP 823
A P PP P P PP PPPP
Sbjct: 178 AAPVKSPPSAPSLPSAVPPMPPKVPPPP 205
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 25.8 bits (54), Expect = 9.4
Identities = 11/28 (39%), Positives = 13/28 (46%), Gaps = 1/28 (3%)
Frame = +3
Query: 762 TPQXPPXXPPXXP-PXXXPPPPPEXXSP 842
+P+ PP P P PPPPP P
Sbjct: 220 SPEIPPTYTPKQADPLPAPPPPPPPTLP 247
Score = 25.8 bits (54), Expect = 9.4
Identities = 14/47 (29%), Positives = 15/47 (31%)
Frame = +3
Query: 765 PQXPPXXPPXXPPXXXPPPPPEXXSPXXXXXGTGGXPXXPPPPGXXS 905
P PP PP PP + P G PPPP S
Sbjct: 236 PAPPPPPPPTLPP--QSTNTSQLPMPSRNVNNLGSQVNIPPPPATPS 280
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 25.8 bits (54), Expect = 9.4
Identities = 12/40 (30%), Positives = 14/40 (35%)
Frame = +3
Query: 786 PPXXPPXXXPPPPPEXXSPXXXXXGTGGXPXXPPPPGXXS 905
PP P PP P +P +G PP P S
Sbjct: 1032 PPIPVPSTAPPVPIPTSTPPVPKSSSGAPSAPPPVPAPSS 1071
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,932,565
Number of Sequences: 5004
Number of extensions: 25268
Number of successful extensions: 245
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 53
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 148
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 507285244
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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