Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP06_F_K16
         (907 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein Msa1|Schizosa...    33   0.056
SPBC409.21 |sec66||ER protein translocation subcomplex subunit S...    30   0.39 
SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase Ino80|Schizo...    30   0.39 
SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces po...    29   0.69 
SPCC1919.10c |myo52||myosin type V|Schizosaccharomyces pombe|chr...    27   2.8  
SPAC3G9.14 |sak1||transcriptional repressor Sak1|Schizosaccharom...    27   4.8  
SPBC18H10.11c |||conserved fungal protein|Schizosaccharomyces po...    27   4.8  
SPBC36B7.03 |sec63||ER protein translocation subcomplex subunit ...    26   6.4  
SPAC8C9.06c |||mitochondrial translation regulator |Schizosaccha...    26   6.4  
SPBC1703.03c |||armadillo repeat protein, unknown biological rol...    26   6.4  
SPBC1289.06c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    26   8.5  

>SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein
           Msa1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 533

 Score = 33.1 bits (72), Expect = 0.056
 Identities = 32/124 (25%), Positives = 50/124 (40%), Gaps = 2/124 (1%)
 Frame = +1

Query: 244 SKALSAANNVFVRDYATTKKTESLDPLLQKLDSEVRRYGRITKRDIDEVLDEIQSKNDIT 423
           SKALS A N  +       +   ++  ++   +  + Y  ITK+DID +L+      D+T
Sbjct: 135 SKALSEAQNTILDGRHIRIERAKVNRTIRISSAPHQPY--ITKKDIDNLLEPYGEVEDVT 192

Query: 424 S--SQSLLVIRCCGELVPEELPEQRTLLVQKIWSVLTERGIAMDISHYNALLRVYIENQH 597
               QS  ++R    +  +E     T L    W VL    +     HY        +   
Sbjct: 193 EIPDQSAFLVRF---VYRDEAIAAYTALKHSAWPVLWAENVTYQNGHYKK------KGSS 243

Query: 598 PFSP 609
           PFSP
Sbjct: 244 PFSP 247


>SPBC409.21 |sec66||ER protein translocation subcomplex subunit
           Sec66 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 192

 Score = 30.3 bits (65), Expect = 0.39
 Identities = 11/47 (23%), Positives = 25/47 (53%)
 Frame = +1

Query: 337 DSEVRRYGRITKRDIDEVLDEIQSKNDITSSQSLLVIRCCGELVPEE 477
           D  +R++GR+ K    E++D  ++ N +    +  + + C E++  E
Sbjct: 101 DELIRKFGRLEKETELELMDIAKTANSLQPGWNQFIFQTCNEIIENE 147


>SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase
            Ino80|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1604

 Score = 30.3 bits (65), Expect = 0.39
 Identities = 25/103 (24%), Positives = 45/103 (43%), Gaps = 1/103 (0%)
 Frame = +1

Query: 199  ILNSVKTAEASAFLNSKALSAANNVFVRDYATTKKTESLDPLLQKLDSEVRRYGRITK-R 375
            +++ +  AEAS+ L  + L      + +DY+  +K   L   + K+D     +   +   
Sbjct: 1258 VVHYLDEAEASSSLKEEQLCRQEFCYGKDYSNVRKMLLLPKSITKVDVLGSDFKEDSPFY 1317

Query: 376  DIDEVLDEIQSKNDITSSQSLLVIRCCGELVPEELPEQRTLLV 504
             +  VL+E  S+ D+T   S+LV R     +    P  R   V
Sbjct: 1318 HLTHVLEESDSQLDLTLLDSVLVQRASAPPIDIYCPGSRQFTV 1360


>SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 646

 Score = 29.5 bits (63), Expect = 0.69
 Identities = 26/108 (24%), Positives = 45/108 (41%)
 Frame = +1

Query: 190 RTLILNSVKTAEASAFLNSKALSAANNVFVRDYATTKKTESLDPLLQKLDSEVRRYGRIT 369
           R  +++S+   E    L   +           Y    +   + P+L K+D        + 
Sbjct: 138 RAEVMHSLAACEGCILLVDASQGIQAQTLSNFYMAFSQNLVIIPVLNKVD--------LP 189

Query: 370 KRDIDEVLDEIQSKNDITSSQSLLVIRCCGELVPEELPEQRTLLVQKI 513
             D+D  L ++Q   DI  S+ +LV    G+ V + LPE    ++QKI
Sbjct: 190 TADVDRTLIQVQQTFDIPMSKPILVSSKTGKNVEQILPE----IIQKI 233


>SPCC1919.10c |myo52||myosin type V|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1516

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 13/54 (24%), Positives = 25/54 (46%)
 Frame = +1

Query: 400 IQSKNDITSSQSLLVIRCCGELVPEELPEQRTLLVQKIWSVLTERGIAMDISHY 561
           IQ+KN I   QS++      + + E+     TL++Q +W          ++ +Y
Sbjct: 838 IQTKNSILKVQSIIRGFLLRQTLEEKTKHDATLIIQSLWLTFKAHKHYKELQYY 891


>SPAC3G9.14 |sak1||transcriptional repressor
           Sak1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 766

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
 Frame = +1

Query: 241 NSKALSAANNVFVRDYAT-TKKTESLDPLLQKLDSEVRRYGRITKRDIDEVLDEI 402
           N K   AA + +    +T +  +E LDPL  K ++      R+  R ID VLD +
Sbjct: 559 NDKEAVAALDEWYSILSTCSNPSELLDPLKDKHEASDTSMNRVELRQIDGVLDRM 613


>SPBC18H10.11c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 432

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 14/63 (22%), Positives = 30/63 (47%)
 Frame = +1

Query: 502 VQKIWSVLTERGIAMDISHYNALLRVYIENQHPFSPAQFLTELENKGLQPNRVTYQRLMW 681
           ++K   +L ER  A     YN +L+ ++   H  +      +++ +  +P+  TY  L+ 
Sbjct: 93  LEKALHLLYERSNAKKTVAYNLVLQYHLAKGHYNAAWSLYNDMKKRQQKPSDHTYSILLK 152

Query: 682 RYC 690
            +C
Sbjct: 153 GFC 155


>SPBC36B7.03 |sec63||ER protein translocation subcomplex subunit
           Sec63 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 611

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 14/32 (43%), Positives = 17/32 (53%)
 Frame = +3

Query: 756 SEPVLNALVMGHAFHGDTEGAKXVLKLWQDLV 851
           S+ VLNAL+      G       VLKLWQ +V
Sbjct: 296 SDVVLNALLSVATAFGFANPVDNVLKLWQHIV 327


>SPAC8C9.06c |||mitochondrial translation regulator
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 931

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 16/61 (26%), Positives = 30/61 (49%)
 Frame = +1

Query: 502 VQKIWSVLTERGIAMDISHYNALLRVYIENQHPFSPAQFLTELENKGLQPNRVTYQRLMW 681
           ++KI    +++GI      Y ALL  YIE +       +L ++   G+  + V+  R++ 
Sbjct: 482 MEKIHQYFSDQGIKTSNQAYAALLDAYIEAEDTEKIELYLGKIRRLGITED-VSINRMLM 540

Query: 682 R 684
           R
Sbjct: 541 R 541


>SPBC1703.03c |||armadillo repeat protein, unknown biological
           role|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 664

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 23/80 (28%), Positives = 35/80 (43%)
 Frame = +1

Query: 229 SAFLNSKALSAANNVFVRDYATTKKTESLDPLLQKLDSEVRRYGRITKRDIDEVLDEIQS 408
           S F+N K  S    + + D       E+L P+L  L      Y  + ++  D+       
Sbjct: 268 SGFVNKKMESVVKGISLFDSFIP---EAL-PILSDLLPSEENYRNLVRQVYDKDTYFKTK 323

Query: 409 KNDITSSQSLLVIRCCGELV 468
           K+D+T S  LLVI    EL+
Sbjct: 324 KDDLTLSSELLVIPATLELI 343


>SPBC1289.06c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 481

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = +1

Query: 628 LENKGLQPNRVTYQRLMWRYC 690
           ++  GL+P  VTY+ L+  YC
Sbjct: 392 IDKYGLKPTHVTYRSLLKAYC 412


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,345,228
Number of Sequences: 5004
Number of extensions: 66328
Number of successful extensions: 170
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 163
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 170
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 458501510
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)