Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP06_F_K15
         (953 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    34   0.026
SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex p...    28   2.2  
SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar...    27   2.9  
SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr...    27   5.1  
SPBC17D1.01 ||SPBC17D11.09|sequence orphan|Schizosaccharomyces p...    26   6.8  

>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 34.3 bits (75), Expect = 0.026
 Identities = 25/56 (44%), Positives = 25/56 (44%), Gaps = 3/56 (5%)
 Frame = -2

Query: 916 GGXXXXPPXPKGXK--XGXGXPGXPXGG-GXRGGXPGGXFXGGXPRGFFKSXXGXG 758
           GG    PP P G     G G  G   GG G  GG PGG F GG P GF     G G
Sbjct: 195 GGSGGPPPGPGGFGGFGGFGGEGHHHGGHGGFGGGPGG-FEGG-PGGFGGGPGGFG 248



 Score = 33.1 bits (72), Expect = 0.059
 Identities = 26/73 (35%), Positives = 26/73 (35%), Gaps = 6/73 (8%)
 Frame = -2

Query: 952 GXXPXPGXXPPXGGXXXXPPXPKGXKXGXGXPGXPXGG-GXRGGXPGG-----XFXGGXP 791
           G  P PG     GG         G     G PG   GG G  GG PGG        GG P
Sbjct: 199 GPPPGPGGFGGFGGFGGEGHHHGGHGGFGGGPGGFEGGPGGFGGGPGGFGGGLGGFGGGP 258

Query: 790 RGFFKSXXGXGXP 752
            GF     G G P
Sbjct: 259 GGFGGGPGGHGGP 271


>SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex
           protein Gar1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 194

 Score = 27.9 bits (59), Expect = 2.2
 Identities = 18/40 (45%), Positives = 18/40 (45%), Gaps = 2/40 (5%)
 Frame = -2

Query: 895 PXPK--GXKXGXGXPGXPXGGGXRGGXPGGXFXGGXPRGF 782
           P PK  G K   G    P G G RGG  GG   GG   GF
Sbjct: 117 PKPKTVGPKKPKGARNGPAGRGGRGGFRGG--RGGSRGGF 154



 Score = 27.1 bits (57), Expect = 3.9
 Identities = 16/30 (53%), Positives = 16/30 (53%)
 Frame = -2

Query: 871 GXGXPGXPXGGGXRGGXPGGXFXGGXPRGF 782
           G G  G   GGG RGG  GG F GG   GF
Sbjct: 163 GGGSRGG-FGGGSRGGSRGG-FRGGSRGGF 190


>SPAC57A7.04c |pabp||mRNA export shuttling protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 653

 Score = 27.5 bits (58), Expect = 2.9
 Identities = 21/81 (25%), Positives = 26/81 (32%), Gaps = 2/81 (2%)
 Frame = +3

Query: 582 RLSXXSGIPRKXL*XKGP--QXPXTXKSPXXAXCRGXPXVPAPXXXXKTXXXXPXXXXXG 755
           +++  +GIP       GP    P     P     RG P VP            P     G
Sbjct: 464 QVAAAAGIPAVQYGATGPLIYGPGGYPIPAAVNGRGMPMVPGHNGPMPMYPGMPTQFPAG 523

Query: 756 XPXPXXDLKNPRGXPPXKXPP 818
            P P     N RG  P +  P
Sbjct: 524 GPAPGYPGMNARGPVPAQGRP 544


>SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 305

 Score = 26.6 bits (56), Expect = 5.1
 Identities = 17/51 (33%), Positives = 18/51 (35%)
 Frame = -2

Query: 937 PGXXPPXGGXXXXPPXPKGXKXGXGXPGXPXGGGXRGGXPGGXFXGGXPRG 785
           PG     GG         G + G G       GG RGG  GG    G  RG
Sbjct: 5   PGSRGGRGGSRGGRGGFNGGRGGFGGGRGGARGGGRGGARGGRGGRGGARG 55


>SPBC17D1.01 ||SPBC17D11.09|sequence orphan|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 584

 Score = 26.2 bits (55), Expect = 6.8
 Identities = 13/28 (46%), Positives = 15/28 (53%)
 Frame = +1

Query: 388 QQQLHPFMFQVQGEVWXVFSALMNRPTP 471
           Q  LHP + Q   E   +FSAL   PTP
Sbjct: 379 QNSLHPLISQ--SETHSIFSALSETPTP 404


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,666,243
Number of Sequences: 5004
Number of extensions: 38634
Number of successful extensions: 84
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 69
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 79
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 487313384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)