Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP06_F_K14
(953 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U41007-10|AAL32214.1| 118|Caenorhabditis elegans Sr protein (sp... 81 2e-15
U41007-9|AAL32213.1| 153|Caenorhabditis elegans Sr protein (spl... 81 2e-15
U41007-8|AAA82270.1| 179|Caenorhabditis elegans Sr protein (spl... 81 2e-15
AL132904-14|CAC35847.2| 258|Caenorhabditis elegans Hypothetical... 56 3e-08
AF242767-1|AAG36874.1| 258|Caenorhabditis elegans SF2 protein. 56 3e-08
U28738-11|AAK68399.3| 166|Caenorhabditis elegans Sr protein (sp... 55 9e-08
U28738-10|AAK72066.3| 208|Caenorhabditis elegans Sr protein (sp... 55 9e-08
U28738-9|AAA68314.3| 208|Caenorhabditis elegans Sr protein (spl... 55 9e-08
Z66521-4|CAD59160.1| 150|Caenorhabditis elegans Hypothetical pr... 51 1e-06
Z66521-3|CAD59159.1| 148|Caenorhabditis elegans Hypothetical pr... 51 1e-06
Z66521-2|CAA91395.1| 312|Caenorhabditis elegans Hypothetical pr... 51 1e-06
Z66521-8|CAA91394.1| 281|Caenorhabditis elegans Hypothetical pr... 49 6e-06
Z99279-4|CAB16494.1| 121|Caenorhabditis elegans Hypothetical pr... 48 1e-05
Z32683-11|CAA83626.1| 142|Caenorhabditis elegans Hypothetical p... 46 5e-05
U24123-1|AAA65224.1| 646|Caenorhabditis elegans polyadenylate-b... 46 5e-05
Z81108-1|CAB03236.1| 83|Caenorhabditis elegans Hypothetical pr... 45 7e-05
AL032631-4|CAE54917.1| 586|Caenorhabditis elegans Hypothetical ... 45 7e-05
AL032631-3|CAE54916.1| 583|Caenorhabditis elegans Hypothetical ... 45 7e-05
AL032631-2|CAA21572.1| 646|Caenorhabditis elegans Hypothetical ... 45 7e-05
AC024791-23|AAM81102.1| 346|Caenorhabditis elegans Rnp (rrm rna... 44 2e-04
AC024791-22|AAF60676.1| 339|Caenorhabditis elegans Rnp (rrm rna... 44 2e-04
AC024791-21|AAF60666.1| 749|Caenorhabditis elegans Rnp (rrm rna... 44 2e-04
AL110485-8|CAB60356.1| 434|Caenorhabditis elegans Hypothetical ... 42 7e-04
Z83230-6|CAB05746.1| 336|Caenorhabditis elegans Hypothetical pr... 41 0.001
Z81106-3|CAB03222.1| 84|Caenorhabditis elegans Hypothetical pr... 41 0.001
Z81108-4|CAB03237.1| 85|Caenorhabditis elegans Hypothetical pr... 40 0.002
AL117204-22|CAB55151.1| 331|Caenorhabditis elegans Hypothetical... 40 0.002
Z78536-3|CAB01717.2| 360|Caenorhabditis elegans Hypothetical pr... 39 0.006
U55363-5|AAA97963.1| 351|Caenorhabditis elegans Spindle orienta... 38 0.008
AF067616-7|AAM98029.1| 423|Caenorhabditis elegans Hypothetical ... 38 0.008
AF067616-6|AAC19192.1| 520|Caenorhabditis elegans Hypothetical ... 38 0.008
AF067616-5|AAU05574.1| 497|Caenorhabditis elegans Hypothetical ... 38 0.008
AB052819-1|BAC65239.1| 351|Caenorhabditis elegans PIP-1 protein. 38 0.008
U28944-7|AAN63457.1| 295|Caenorhabditis elegans Hypothetical pr... 38 0.011
U28944-6|AAN63456.1| 305|Caenorhabditis elegans Hypothetical pr... 38 0.011
U28944-5|AAK68191.1| 408|Caenorhabditis elegans Hypothetical pr... 38 0.011
U28944-4|AAK68192.1| 376|Caenorhabditis elegans Hypothetical pr... 38 0.011
Z50044-2|CAA90354.1| 256|Caenorhabditis elegans Hypothetical pr... 38 0.014
U41531-7|AAA83161.2| 415|Caenorhabditis elegans Feminizing gene... 38 0.014
U14946-1|AAA67723.1| 415|Caenorhabditis elegans ribonucleoprote... 38 0.014
AF098993-1|AAC67471.2| 367|Caenorhabditis elegans Zinc finger t... 38 0.014
Z36238-3|CAA85276.1| 404|Caenorhabditis elegans Hypothetical pr... 37 0.018
U00052-10|AAK21429.2| 289|Caenorhabditis elegans Rnp (rrm rna b... 37 0.018
DQ485531-1|ABF22491.1| 404|Caenorhabditis elegans RNA-binding p... 37 0.018
U80455-2|AAB37882.2| 420|Caenorhabditis elegans Elav-type rna b... 36 0.032
U80455-1|AAB37881.1| 584|Caenorhabditis elegans Elav-type rna b... 36 0.032
U53931-1|AAA98566.1| 584|Caenorhabditis elegans elav-type ribon... 36 0.032
U21320-5|AAA62536.2| 332|Caenorhabditis elegans Rnp (rrm rna bi... 36 0.032
EF523770-1|ABS18836.1| 513|Caenorhabditis elegans ELAV-type RNA... 36 0.032
EF523766-1|ABS18832.1| 584|Caenorhabditis elegans ELAV-type RNA... 36 0.032
AC024826-10|AAM97977.1| 435|Caenorhabditis elegans Hypothetical... 36 0.032
AC024826-8|AAF60795.2| 580|Caenorhabditis elegans Hypothetical ... 36 0.032
Z81037-3|CAB02750.1| 205|Caenorhabditis elegans Hypothetical pr... 36 0.043
Z50110-2|CAA90446.1| 566|Caenorhabditis elegans Hypothetical pr... 36 0.043
Z50110-1|CAA90444.1| 692|Caenorhabditis elegans Hypothetical pr... 36 0.043
AL137227-1|CAB70238.2| 611|Caenorhabditis elegans Hypothetical ... 36 0.043
Z83127-4|CAB05631.1| 872|Caenorhabditis elegans Hypothetical pr... 35 0.075
AC084197-11|AAM44397.1| 305|Caenorhabditis elegans Homologous t... 35 0.099
AC084197-10|AAY43984.1| 308|Caenorhabditis elegans Homologous t... 35 0.099
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 34 0.13
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 34 0.13
Z36752-6|CAA85327.1| 456|Caenorhabditis elegans Hypothetical pr... 33 0.23
Z35601-1|CAA84667.2| 320|Caenorhabditis elegans Hypothetical pr... 33 0.23
AB036738-1|BAB13470.1| 320|Caenorhabditis elegans neural RNA-bi... 33 0.23
Z81120-1|CAB03342.1| 207|Caenorhabditis elegans Hypothetical pr... 32 0.70
U23450-1|AAK31467.2| 422|Caenorhabditis elegans Cpeb polya bind... 31 0.92
Z97628-2|CAB10726.2| 427|Caenorhabditis elegans Hypothetical pr... 30 2.1
Z81080-5|CAB03088.2| 427|Caenorhabditis elegans Hypothetical pr... 30 2.1
Z81080-2|CAD56584.1| 358|Caenorhabditis elegans Hypothetical pr... 30 2.1
Z78419-2|CAB01702.1| 154|Caenorhabditis elegans Hypothetical pr... 30 2.1
Z36238-4|CAD82915.1| 286|Caenorhabditis elegans Hypothetical pr... 30 2.8
U55857-6|AAA98032.2| 206|Caenorhabditis elegans Rnp (rrm rna bi... 30 2.8
U39853-2|AAK39225.1| 771|Caenorhabditis elegans Kinase suppress... 30 2.8
U38820-1|AAA92436.1| 771|Caenorhabditis elegans KSR-1 protein. 30 2.8
S80647-1|AAB35769.1| 771|Caenorhabditis elegans KSR-1 protein. 30 2.8
D10877-1|BAA01645.1| 346|Caenorhabditis elegans hnRNP like prot... 30 2.8
AF038613-8|AAL02515.2| 309|Caenorhabditis elegans Human hnrnp a... 30 2.8
AF038613-7|ABB51185.1| 308|Caenorhabditis elegans Human hnrnp a... 30 2.8
AF038613-6|ABB51186.1| 347|Caenorhabditis elegans Human hnrnp a... 30 2.8
AF038613-5|AAB92051.1| 346|Caenorhabditis elegans Human hnrnp a... 30 2.8
U55857-7|AAA98033.1| 217|Caenorhabditis elegans Rnp (rrm rna bi... 29 3.7
AC024844-6|AAK29956.1| 442|Caenorhabditis elegans Hypothetical ... 29 3.7
U79157-1|AAC26982.1| 496|Caenorhabditis elegans splicing factor... 29 4.9
AC024875-3|AAK29989.1| 496|Caenorhabditis elegans U2af splicing... 29 4.9
AC024875-2|AAM44400.1| 471|Caenorhabditis elegans U2af splicing... 29 4.9
AC024875-1|AAL00879.1| 474|Caenorhabditis elegans U2af splicing... 29 4.9
Z81473-3|CAB03896.4| 514|Caenorhabditis elegans Hypothetical pr... 29 6.5
U28928-13|AAL16321.1| 339|Caenorhabditis elegans Hypothetical p... 29 6.5
U28928-12|AAL16320.2| 597|Caenorhabditis elegans Hypothetical p... 29 6.5
AY342388-1|AAQ19851.1| 514|Caenorhabditis elegans putative RNA-... 29 6.5
AF038618-2|AAB92072.1| 487|Caenorhabditis elegans Hypothetical ... 28 8.6
AC024793-5|AAF60689.1| 79|Caenorhabditis elegans Hypothetical ... 28 8.6
>U41007-10|AAL32214.1| 118|Caenorhabditis elegans Sr protein
(splicing factor) protein6, isoform c protein.
Length = 118
Score = 80.6 bits (190), Expect = 2e-15
Identities = 32/71 (45%), Positives = 52/71 (73%)
Frame = +3
Query: 207 RVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFMEFENLQEAEDACSAMNGTE 386
+VYVGGL ++LE FD++G++ VWVA PPGFAF+E++++++AEDA A++G+
Sbjct: 4 KVYVGGLPSDATSQELEEIFDRFGRIRKVWVARRPPGFAFVEYDDVRDAEDAVRALDGSR 63
Query: 387 MLGATLKVEIS 419
+ G +VE+S
Sbjct: 64 ICGVRARVELS 74
>U41007-9|AAL32213.1| 153|Caenorhabditis elegans Sr protein
(splicing factor) protein6, isoform b protein.
Length = 153
Score = 80.6 bits (190), Expect = 2e-15
Identities = 32/71 (45%), Positives = 52/71 (73%)
Frame = +3
Query: 207 RVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFMEFENLQEAEDACSAMNGTE 386
+VYVGGL ++LE FD++G++ VWVA PPGFAF+E++++++AEDA A++G+
Sbjct: 4 KVYVGGLPSDATSQELEEIFDRFGRIRKVWVARRPPGFAFVEYDDVRDAEDAVRALDGSR 63
Query: 387 MLGATLKVEIS 419
+ G +VE+S
Sbjct: 64 ICGVRARVELS 74
>U41007-8|AAA82270.1| 179|Caenorhabditis elegans Sr protein
(splicing factor) protein6, isoform a protein.
Length = 179
Score = 80.6 bits (190), Expect = 2e-15
Identities = 32/71 (45%), Positives = 52/71 (73%)
Frame = +3
Query: 207 RVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFMEFENLQEAEDACSAMNGTE 386
+VYVGGL ++LE FD++G++ VWVA PPGFAF+E++++++AEDA A++G+
Sbjct: 4 KVYVGGLPSDATSQELEEIFDRFGRIRKVWVARRPPGFAFVEYDDVRDAEDAVRALDGSR 63
Query: 387 MLGATLKVEIS 419
+ G +VE+S
Sbjct: 64 ICGVRARVELS 74
>AL132904-14|CAC35847.2| 258|Caenorhabditis elegans Hypothetical
protein Y111B2A.18 protein.
Length = 258
Score = 56.4 bits (130), Expect = 3e-08
Identities = 31/81 (38%), Positives = 50/81 (61%), Gaps = 4/81 (4%)
Frame = +3
Query: 189 MSSGGT---RVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNP-PGFAFMEFENLQEAE 356
M GG+ +VYVG L ++++++E F KYG++ V + P FAF+EFE+ ++AE
Sbjct: 1 MPRGGSEDQKVYVGNLPGDVREKEVEDIFHKYGRIKYVDIKSGRGPAFAFVEFEDHRDAE 60
Query: 357 DACSAMNGTEMLGATLKVEIS 419
DA A +G E G ++VE +
Sbjct: 61 DAVRARDGYEFDGRRIRVEFT 81
>AF242767-1|AAG36874.1| 258|Caenorhabditis elegans SF2 protein.
Length = 258
Score = 56.4 bits (130), Expect = 3e-08
Identities = 31/81 (38%), Positives = 50/81 (61%), Gaps = 4/81 (4%)
Frame = +3
Query: 189 MSSGGT---RVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNP-PGFAFMEFENLQEAE 356
M GG+ +VYVG L ++++++E F KYG++ V + P FAF+EFE+ ++AE
Sbjct: 1 MPRGGSEDQKVYVGNLPGDVREKEVEDIFHKYGRIKYVDIKSGRGPAFAFVEFEDHRDAE 60
Query: 357 DACSAMNGTEMLGATLKVEIS 419
DA A +G E G ++VE +
Sbjct: 61 DAVRARDGYEFDGRRIRVEFT 81
>U28738-11|AAK68399.3| 166|Caenorhabditis elegans Sr protein
(splicing factor) protein5, isoform b protein.
Length = 166
Score = 54.8 bits (126), Expect = 9e-08
Identities = 24/70 (34%), Positives = 47/70 (67%)
Frame = +3
Query: 207 RVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFMEFENLQEAEDACSAMNGTE 386
R+Y+G + ++ D+ER YGK+N++ + GFAF++FE+ ++AEDAC ++G
Sbjct: 3 RLYLGKIPYNARERDVERFLKGYGKINNISMKY---GFAFVDFEDSRDAEDACHDLDGKT 59
Query: 387 MLGATLKVEI 416
M G+++++ +
Sbjct: 60 MEGSSMRLVV 69
>U28738-10|AAK72066.3| 208|Caenorhabditis elegans Sr protein
(splicing factor) protein5, isoform d protein.
Length = 208
Score = 54.8 bits (126), Expect = 9e-08
Identities = 24/70 (34%), Positives = 47/70 (67%)
Frame = +3
Query: 207 RVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFMEFENLQEAEDACSAMNGTE 386
R+Y+G + ++ D+ER YGK+N++ + GFAF++FE+ ++AEDAC ++G
Sbjct: 3 RLYLGKIPYNARERDVERFLKGYGKINNISMKY---GFAFVDFEDSRDAEDACHDLDGKT 59
Query: 387 MLGATLKVEI 416
M G+++++ +
Sbjct: 60 MEGSSMRLVV 69
>U28738-9|AAA68314.3| 208|Caenorhabditis elegans Sr protein
(splicing factor) protein5, isoform a protein.
Length = 208
Score = 54.8 bits (126), Expect = 9e-08
Identities = 24/70 (34%), Positives = 47/70 (67%)
Frame = +3
Query: 207 RVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFMEFENLQEAEDACSAMNGTE 386
R+Y+G + ++ D+ER YGK+N++ + GFAF++FE+ ++AEDAC ++G
Sbjct: 3 RLYLGKIPYNARERDVERFLKGYGKINNISMKY---GFAFVDFEDSRDAEDACHDLDGKT 59
Query: 387 MLGATLKVEI 416
M G+++++ +
Sbjct: 60 MEGSSMRLVV 69
>Z66521-4|CAD59160.1| 150|Caenorhabditis elegans Hypothetical
protein W02B12.3c protein.
Length = 150
Score = 51.2 bits (117), Expect = 1e-06
Identities = 25/71 (35%), Positives = 43/71 (60%)
Frame = +3
Query: 207 RVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFMEFENLQEAEDACSAMNGTE 386
R+Y+G L + ++D+E F YG++ V L GF F+EF++ ++AEDA +NG E
Sbjct: 4 RIYIGRLTSRVSEKDIEHFFRGYGQIRDV---LLKNGFGFVEFDDKRDAEDAVHDLNGKE 60
Query: 387 MLGATLKVEIS 419
+ G + ++ S
Sbjct: 61 LGGERVILDYS 71
>Z66521-3|CAD59159.1| 148|Caenorhabditis elegans Hypothetical
protein W02B12.3b protein.
Length = 148
Score = 51.2 bits (117), Expect = 1e-06
Identities = 25/71 (35%), Positives = 43/71 (60%)
Frame = +3
Query: 207 RVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFMEFENLQEAEDACSAMNGTE 386
R+Y+G L + ++D+E F YG++ V L GF F+EF++ ++AEDA +NG E
Sbjct: 4 RIYIGRLTSRVSEKDIEHFFRGYGQIRDV---LLKNGFGFVEFDDKRDAEDAVHDLNGKE 60
Query: 387 MLGATLKVEIS 419
+ G + ++ S
Sbjct: 61 LGGERVILDYS 71
>Z66521-2|CAA91395.1| 312|Caenorhabditis elegans Hypothetical
protein W02B12.3a protein.
Length = 312
Score = 51.2 bits (117), Expect = 1e-06
Identities = 25/71 (35%), Positives = 43/71 (60%)
Frame = +3
Query: 207 RVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFMEFENLQEAEDACSAMNGTE 386
R+Y+G L + ++D+E F YG++ V L GF F+EF++ ++AEDA +NG E
Sbjct: 4 RIYIGRLTSRVSEKDIEHFFRGYGQIRDV---LLKNGFGFVEFDDKRDAEDAVHDLNGKE 60
Query: 387 MLGATLKVEIS 419
+ G + ++ S
Sbjct: 61 LGGERVILDYS 71
>Z66521-8|CAA91394.1| 281|Caenorhabditis elegans Hypothetical
protein W02B12.2 protein.
Length = 281
Score = 48.8 bits (111), Expect = 6e-06
Identities = 25/69 (36%), Positives = 40/69 (57%)
Frame = +3
Query: 207 RVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFMEFENLQEAEDACSAMNGTE 386
RVY+G L D+E F YGKL+ V + GF F++F++ ++A+DA +NG E
Sbjct: 3 RVYIGRLPNRASDRDVEHFFRGYGKLSDV---IMKNGFGFVDFQDQRDADDAVHDLNGKE 59
Query: 387 MLGATLKVE 413
+ G + +E
Sbjct: 60 LCGERVILE 68
>Z99279-4|CAB16494.1| 121|Caenorhabditis elegans Hypothetical
protein Y57G11A.5 protein.
Length = 121
Score = 47.6 bits (108), Expect = 1e-05
Identities = 21/55 (38%), Positives = 31/55 (56%)
Frame = +3
Query: 252 LEREFDKYGKLNSVWVALNPPGFAFMEFENLQEAEDACSAMNGTEMLGATLKVEI 416
+E F G + S+W+A PPGFAF+ F+ A DA +NG ++ KVE+
Sbjct: 44 IEAVFSVMGPIKSIWMAKRPPGFAFVTFKRTVHAFDAVKYLNGKKICDLEAKVEM 98
>Z32683-11|CAA83626.1| 142|Caenorhabditis elegans Hypothetical
protein R07E5.14 protein.
Length = 142
Score = 45.6 bits (103), Expect = 5e-05
Identities = 23/76 (30%), Positives = 44/76 (57%), Gaps = 5/76 (6%)
Frame = +3
Query: 201 GTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNP-----PGFAFMEFENLQEAEDAC 365
G V+V + E ++D+ +F +YGK+ ++ + L+ G+A +E+E +EA +A
Sbjct: 54 GWIVFVTNIHEEATEDDVHDKFSEYGKIKNIHLNLDRRTGFLKGYALVEYETQKEANEAI 113
Query: 366 SAMNGTEMLGATLKVE 413
N T++LG +KV+
Sbjct: 114 DQSNDTDLLGQNVKVD 129
>U24123-1|AAA65224.1| 646|Caenorhabditis elegans
polyadenylate-binding protein protein.
Length = 646
Score = 45.6 bits (103), Expect = 5e-05
Identities = 26/74 (35%), Positives = 38/74 (51%), Gaps = 3/74 (4%)
Frame = +3
Query: 204 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVAL---NPPGFAFMEFENLQEAEDACSAM 374
T VYV + KE LE+ F K+G + S V GF F+ F N +EAE A A+
Sbjct: 213 TNVYVKNFGDHYNKETLEKVFAKFGNITSCEVMTVEGKSKGFGFVAFANPEEAETAVQAL 272
Query: 375 NGTEMLGATLKVEI 416
+ + + G LK+ +
Sbjct: 273 HDSTIEGTDLKLHV 286
Score = 40.3 bits (90), Expect = 0.002
Identities = 24/76 (31%), Positives = 37/76 (48%), Gaps = 4/76 (5%)
Frame = +3
Query: 201 GTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN----PPGFAFMEFENLQEAEDACS 368
G +YV L E + + L+++F+ YG + S V + GF F+ FE +EA A +
Sbjct: 316 GVNLYVKNLDETVDDDGLKKQFESYGNITSAKVMTDENGRSKGFGFVCFEKPEEATSAVT 375
Query: 369 AMNGTEMLGATLKVEI 416
MN + L V I
Sbjct: 376 EMNSKMVCSKPLYVAI 391
>Z81108-1|CAB03236.1| 83|Caenorhabditis elegans Hypothetical
protein R09B3.2 protein.
Length = 83
Score = 45.2 bits (102), Expect = 7e-05
Identities = 28/80 (35%), Positives = 40/80 (50%), Gaps = 5/80 (6%)
Frame = +3
Query: 195 SGGTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN-----PPGFAFMEFENLQEAED 359
SG VYVG +E+L F G++N+V + + P GFAF+EF A+
Sbjct: 2 SGIFSVYVGNAPFQTTEEELGNFFSSIGQINNVRIVCDRETGRPRGFAFIEFAEEGSAQR 61
Query: 360 ACSAMNGTEMLGATLKVEIS 419
A MNG E G L+V ++
Sbjct: 62 AVEQMNGAEFNGRPLRVNLA 81
>AL032631-4|CAE54917.1| 586|Caenorhabditis elegans Hypothetical
protein Y106G6H.2c protein.
Length = 586
Score = 45.2 bits (102), Expect = 7e-05
Identities = 26/74 (35%), Positives = 38/74 (51%), Gaps = 3/74 (4%)
Frame = +3
Query: 204 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVAL---NPPGFAFMEFENLQEAEDACSAM 374
T VYV + KE LE+ F K+G + S V GF F+ F N +EAE A A+
Sbjct: 153 TNVYVKNFGDHYNKETLEKLFAKFGNITSCEVMTVEGKSKGFGFVAFANPEEAETAVQAL 212
Query: 375 NGTEMLGATLKVEI 416
+ + + G LK+ +
Sbjct: 213 HDSTIEGTDLKLHV 226
Score = 40.7 bits (91), Expect = 0.002
Identities = 24/77 (31%), Positives = 38/77 (49%), Gaps = 4/77 (5%)
Frame = +3
Query: 201 GTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN----PPGFAFMEFENLQEAEDACS 368
G +YV L E + + L+++F+ YG + S V + GF F+ FE +EA A +
Sbjct: 256 GVNLYVKNLDETVDDDGLKKQFESYGNITSAKVMTDENGRSKGFGFVCFEKPEEATSAVT 315
Query: 369 AMNGTEMLGATLKVEIS 419
MN + L V I+
Sbjct: 316 EMNSKMVCSKPLYVAIA 332
>AL032631-3|CAE54916.1| 583|Caenorhabditis elegans Hypothetical
protein Y106G6H.2b protein.
Length = 583
Score = 45.2 bits (102), Expect = 7e-05
Identities = 26/74 (35%), Positives = 38/74 (51%), Gaps = 3/74 (4%)
Frame = +3
Query: 204 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVAL---NPPGFAFMEFENLQEAEDACSAM 374
T VYV + KE LE+ F K+G + S V GF F+ F N +EAE A A+
Sbjct: 150 TNVYVKNFGDHYNKETLEKLFAKFGNITSCEVMTVEGKSKGFGFVAFANPEEAETAVQAL 209
Query: 375 NGTEMLGATLKVEI 416
+ + + G LK+ +
Sbjct: 210 HDSTIEGTDLKLHV 223
Score = 40.7 bits (91), Expect = 0.002
Identities = 24/77 (31%), Positives = 38/77 (49%), Gaps = 4/77 (5%)
Frame = +3
Query: 201 GTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN----PPGFAFMEFENLQEAEDACS 368
G +YV L E + + L+++F+ YG + S V + GF F+ FE +EA A +
Sbjct: 253 GVNLYVKNLDETVDDDGLKKQFESYGNITSAKVMTDENGRSKGFGFVCFEKPEEATSAVT 312
Query: 369 AMNGTEMLGATLKVEIS 419
MN + L V I+
Sbjct: 313 EMNSKMVCSKPLYVAIA 329
>AL032631-2|CAA21572.1| 646|Caenorhabditis elegans Hypothetical
protein Y106G6H.2a protein.
Length = 646
Score = 45.2 bits (102), Expect = 7e-05
Identities = 26/74 (35%), Positives = 38/74 (51%), Gaps = 3/74 (4%)
Frame = +3
Query: 204 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVAL---NPPGFAFMEFENLQEAEDACSAM 374
T VYV + KE LE+ F K+G + S V GF F+ F N +EAE A A+
Sbjct: 213 TNVYVKNFGDHYNKETLEKLFAKFGNITSCEVMTVEGKSKGFGFVAFANPEEAETAVQAL 272
Query: 375 NGTEMLGATLKVEI 416
+ + + G LK+ +
Sbjct: 273 HDSTIEGTDLKLHV 286
Score = 40.7 bits (91), Expect = 0.002
Identities = 24/77 (31%), Positives = 38/77 (49%), Gaps = 4/77 (5%)
Frame = +3
Query: 201 GTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN----PPGFAFMEFENLQEAEDACS 368
G +YV L E + + L+++F+ YG + S V + GF F+ FE +EA A +
Sbjct: 316 GVNLYVKNLDETVDDDGLKKQFESYGNITSAKVMTDENGRSKGFGFVCFEKPEEATSAVT 375
Query: 369 AMNGTEMLGATLKVEIS 419
MN + L V I+
Sbjct: 376 EMNSKMVCSKPLYVAIA 392
>AC024791-23|AAM81102.1| 346|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 6, isoform c protein.
Length = 346
Score = 44.0 bits (99), Expect = 2e-04
Identities = 26/74 (35%), Positives = 43/74 (58%), Gaps = 5/74 (6%)
Frame = +3
Query: 204 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPG-----FAFMEFENLQEAEDACS 368
+R+YVG + I+++ L R FD +G + S+ ++ +P FAF+E+E + A A
Sbjct: 102 SRIYVGSISFEIREDMLRRAFDPFGPIKSINMSWDPATGHHKTFAFVEYEVPEAALLAQE 161
Query: 369 AMNGTEMLGATLKV 410
+MNG + G LKV
Sbjct: 162 SMNGQMLGGRNLKV 175
Score = 37.9 bits (84), Expect = 0.011
Identities = 21/72 (29%), Positives = 37/72 (51%), Gaps = 5/72 (6%)
Frame = +3
Query: 207 RVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPG-----FAFMEFENLQEAEDACSA 371
RVYV + + + DL+ F+ +G++ +A P G F ++EF NL +A +
Sbjct: 208 RVYVSSVHPDLSETDLKSVFEAFGEIVKCQLARAPTGRGHRGFGYLEFNNLTSQSEAIAG 267
Query: 372 MNGTEMLGATLK 407
MN ++ G L+
Sbjct: 268 MNMFDLGGQYLR 279
>AC024791-22|AAF60676.1| 339|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 6, isoform a protein.
Length = 339
Score = 44.0 bits (99), Expect = 2e-04
Identities = 26/74 (35%), Positives = 43/74 (58%), Gaps = 5/74 (6%)
Frame = +3
Query: 204 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPG-----FAFMEFENLQEAEDACS 368
+R+YVG + I+++ L R FD +G + S+ ++ +P FAF+E+E + A A
Sbjct: 102 SRIYVGSISFEIREDMLRRAFDPFGPIKSINMSWDPATGHHKTFAFVEYEVPEAALLAQE 161
Query: 369 AMNGTEMLGATLKV 410
+MNG + G LKV
Sbjct: 162 SMNGQMLGGRNLKV 175
Score = 39.5 bits (88), Expect = 0.003
Identities = 22/73 (30%), Positives = 38/73 (52%), Gaps = 5/73 (6%)
Frame = +3
Query: 207 RVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPG-----FAFMEFENLQEAEDACSA 371
RVYV + + + DL+ F+ +G++ +A P G F ++EF NL +A +
Sbjct: 208 RVYVSSVHPDLSETDLKSVFEAFGEIVKCQLARAPTGRGHRGFGYLEFNNLTSQSEAIAG 267
Query: 372 MNGTEMLGATLKV 410
MN ++ G L+V
Sbjct: 268 MNMFDLGGQYLRV 280
>AC024791-21|AAF60666.1| 749|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 6, isoform b protein.
Length = 749
Score = 44.0 bits (99), Expect = 2e-04
Identities = 26/74 (35%), Positives = 43/74 (58%), Gaps = 5/74 (6%)
Frame = +3
Query: 204 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPG-----FAFMEFENLQEAEDACS 368
+R+YVG + I+++ L R FD +G + S+ ++ +P FAF+E+E + A A
Sbjct: 102 SRIYVGSISFEIREDMLRRAFDPFGPIKSINMSWDPATGHHKTFAFVEYEVPEAALLAQE 161
Query: 369 AMNGTEMLGATLKV 410
+MNG + G LKV
Sbjct: 162 SMNGQMLGGRNLKV 175
Score = 39.5 bits (88), Expect = 0.003
Identities = 22/73 (30%), Positives = 38/73 (52%), Gaps = 5/73 (6%)
Frame = +3
Query: 207 RVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPG-----FAFMEFENLQEAEDACSA 371
RVYV + + + DL+ F+ +G++ +A P G F ++EF NL +A +
Sbjct: 208 RVYVSSVHPDLSETDLKSVFEAFGEIVKCQLARAPTGRGHRGFGYLEFNNLTSQSEAIAG 267
Query: 372 MNGTEMLGATLKV 410
MN ++ G L+V
Sbjct: 268 MNMFDLGGQYLRV 280
>AL110485-8|CAB60356.1| 434|Caenorhabditis elegans Hypothetical
protein Y46G5A.13 protein.
Length = 434
Score = 41.9 bits (94), Expect = 7e-04
Identities = 21/72 (29%), Positives = 40/72 (55%)
Frame = +3
Query: 192 SSGGTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFMEFENLQEAEDACSA 371
++ T VYVG + + ++++ R FD++G +N V G+AF++FE + A A
Sbjct: 252 AADNTSVYVGNIAN-LGEDEIRRAFDRFGPINEVRT-FKIQGYAFVKFETKESAARAIVQ 309
Query: 372 MNGTEMLGATLK 407
MN ++ G ++
Sbjct: 310 MNNADIGGQIVR 321
Score = 31.1 bits (67), Expect = 1.2
Identities = 22/70 (31%), Positives = 35/70 (50%), Gaps = 3/70 (4%)
Frame = +3
Query: 210 VYVGGLVEGIKKEDLEREFDKYG---KLNSVWVALNPPGFAFMEFENLQEAEDACSAMNG 380
++V L I E L F++ G K ++ LN P +AF+EF + +A A + NG
Sbjct: 42 LFVANLDPAITDEFLATLFNQIGAVMKAKIIFEGLNDP-YAFVEFSDHNQATLALQSHNG 100
Query: 381 TEMLGATLKV 410
E+L + V
Sbjct: 101 RELLEKEMHV 110
Score = 29.9 bits (64), Expect = 2.8
Identities = 18/71 (25%), Positives = 33/71 (46%), Gaps = 5/71 (7%)
Frame = +3
Query: 210 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN-----PPGFAFMEFENLQEAEDACSAM 374
V+VG L I L F K+G+++ + + G+ F+ + ++AE A M
Sbjct: 134 VFVGDLCSEIDSTKLREAFVKFGEVSEAKIIRDNNTNKGKGYGFVSYPRREDAERAIDEM 193
Query: 375 NGTEMLGATLK 407
NG + T++
Sbjct: 194 NGAWLGRRTIR 204
>Z83230-6|CAB05746.1| 336|Caenorhabditis elegans Hypothetical
protein F56A8.6 protein.
Length = 336
Score = 41.1 bits (92), Expect = 0.001
Identities = 22/73 (30%), Positives = 40/73 (54%), Gaps = 5/73 (6%)
Frame = +3
Query: 210 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN-----PPGFAFMEFENLQEAEDACSAM 374
V+VG + + ++ + F K G + S+ + + P G+ F+EF ++Q AE A +
Sbjct: 20 VFVGNISYDVSEDTIRSIFSKAGNVLSIKMVHDRETGKPKGYGFIEFPDIQTAEVAIRNL 79
Query: 375 NGTEMLGATLKVE 413
NG E+ G L+V+
Sbjct: 80 NGYELSGRILRVD 92
>Z81106-3|CAB03222.1| 84|Caenorhabditis elegans Hypothetical
protein R06C1.4 protein.
Length = 84
Score = 41.1 bits (92), Expect = 0.001
Identities = 26/79 (32%), Positives = 39/79 (49%), Gaps = 5/79 (6%)
Frame = +3
Query: 189 MSSGGTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN-----PPGFAFMEFENLQEA 353
M+S G VYVG + +E++ F G +N+V + + P GFAF+EF A
Sbjct: 1 MASQGFSVYVGNVPYQGTEEEIGNYFAAVGHVNNVRIVYDRETGRPRGFAFVEFSEEAGA 60
Query: 354 EDACSAMNGTEMLGATLKV 410
+ A +NG G L+V
Sbjct: 61 QRAVEQLNGVAFNGRNLRV 79
>Z81108-4|CAB03237.1| 85|Caenorhabditis elegans Hypothetical
protein R09B3.3 protein.
Length = 85
Score = 40.3 bits (90), Expect = 0.002
Identities = 24/78 (30%), Positives = 38/78 (48%), Gaps = 5/78 (6%)
Frame = +3
Query: 201 GTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN-----PPGFAFMEFENLQEAEDAC 365
G VYVG ++DL F + G +++V + + P GFAF+EF A+ A
Sbjct: 3 GFSVYVGNAPFQTTEDDLGNYFSQAGNVSNVRIVCDRETGRPRGFAFVEFTEEAAAQRAV 62
Query: 366 SAMNGTEMLGATLKVEIS 419
NG + G L+V ++
Sbjct: 63 DQFNGVDFNGRALRVNLA 80
>AL117204-22|CAB55151.1| 331|Caenorhabditis elegans Hypothetical
protein Y116A8C.34 protein.
Length = 331
Score = 40.3 bits (90), Expect = 0.002
Identities = 21/75 (28%), Positives = 41/75 (54%), Gaps = 5/75 (6%)
Frame = +3
Query: 210 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPP-----GFAFMEFENLQEAEDACSAM 374
+YVGG E + ++ L F +G + ++ + ++ GF F+EF+ ++A A M
Sbjct: 13 LYVGGFTEDVTEKVLMAAFIPFGDVVAISIPMDYESGKHRGFGFVEFDMAEDAAMAIDNM 72
Query: 375 NGTEMLGATLKVEIS 419
N +E+ G T++V +
Sbjct: 73 NESELFGKTIRVNFA 87
>Z78536-3|CAB01717.2| 360|Caenorhabditis elegans Hypothetical
protein C07A4.1 protein.
Length = 360
Score = 38.7 bits (86), Expect = 0.006
Identities = 21/62 (33%), Positives = 33/62 (53%), Gaps = 5/62 (8%)
Frame = +3
Query: 210 VYVGGLVEGIKKEDLEREFDKYGKLNSVWV-----ALNPPGFAFMEFENLQEAEDACSAM 374
V+VG L + + E L+ F K+G+++ V G+ F+ F N Q AE+A + M
Sbjct: 137 VFVGDLSKDVSNELLKSTFTKFGEVSEAKVIRDVQTQKSKGYGFVSFPNKQNAENAIAGM 196
Query: 375 NG 380
NG
Sbjct: 197 NG 198
Score = 37.9 bits (84), Expect = 0.011
Identities = 22/64 (34%), Positives = 30/64 (46%)
Frame = +3
Query: 204 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFMEFENLQEAEDACSAMNGT 383
T VYVG + + DL F YG + V + +AF+ +E + A A MNG
Sbjct: 237 TSVYVGNISQQTTDADLRDLFSTYGDIAEVRI-FKTQRYAFVRYEKKECATKAIMEMNGK 295
Query: 384 EMLG 395
EM G
Sbjct: 296 EMAG 299
>U55363-5|AAA97963.1| 351|Caenorhabditis elegans Spindle
orientation defective protein4 protein.
Length = 351
Score = 38.3 bits (85), Expect = 0.008
Identities = 19/71 (26%), Positives = 39/71 (54%), Gaps = 3/71 (4%)
Frame = +3
Query: 207 RVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN---PPGFAFMEFENLQEAEDACSAMN 377
R+YV + +++DL F YG++ SV + N GF F+ ++++ E A +A++
Sbjct: 52 RIYVSNIPFSFREQDLAAMFFAYGRVLSVEIVTNDRGSKGFGFVTLDSIESCEKARAALH 111
Query: 378 GTEMLGATLKV 410
+ + G ++V
Sbjct: 112 ESHVQGRIIEV 122
>AF067616-7|AAM98029.1| 423|Caenorhabditis elegans Hypothetical
protein F29C4.7b protein.
Length = 423
Score = 38.3 bits (85), Expect = 0.008
Identities = 17/58 (29%), Positives = 35/58 (60%)
Frame = +3
Query: 207 RVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFMEFENLQEAEDACSAMNG 380
R++VGGL KE L++ F ++G + ++ P +A++ +EN +++AC ++ G
Sbjct: 252 RLFVGGLGSWCDKEILQKAFGEFGFVENIDYDHGQP-YAYVVYENTHTSQEACRSLRG 308
>AF067616-6|AAC19192.1| 520|Caenorhabditis elegans Hypothetical
protein F29C4.7a protein.
Length = 520
Score = 38.3 bits (85), Expect = 0.008
Identities = 17/58 (29%), Positives = 35/58 (60%)
Frame = +3
Query: 207 RVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFMEFENLQEAEDACSAMNG 380
R++VGGL KE L++ F ++G + ++ P +A++ +EN +++AC ++ G
Sbjct: 252 RLFVGGLGSWCDKEILQKAFGEFGFVENIDYDHGQP-YAYVVYENTHTSQEACRSLRG 308
>AF067616-5|AAU05574.1| 497|Caenorhabditis elegans Hypothetical
protein F29C4.7c protein.
Length = 497
Score = 38.3 bits (85), Expect = 0.008
Identities = 17/58 (29%), Positives = 35/58 (60%)
Frame = +3
Query: 207 RVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFMEFENLQEAEDACSAMNG 380
R++VGGL KE L++ F ++G + ++ P +A++ +EN +++AC ++ G
Sbjct: 229 RLFVGGLGSWCDKEILQKAFGEFGFVENIDYDHGQP-YAYVVYENTHTSQEACRSLRG 285
>AB052819-1|BAC65239.1| 351|Caenorhabditis elegans PIP-1 protein.
Length = 351
Score = 38.3 bits (85), Expect = 0.008
Identities = 19/71 (26%), Positives = 39/71 (54%), Gaps = 3/71 (4%)
Frame = +3
Query: 207 RVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN---PPGFAFMEFENLQEAEDACSAMN 377
R+YV + +++DL F YG++ SV + N GF F+ ++++ E A +A++
Sbjct: 52 RIYVSNIPFSFREQDLAAMFFAYGRVLSVEIVTNDRGSKGFGFVTLDSIESCEKARAALH 111
Query: 378 GTEMLGATLKV 410
+ + G ++V
Sbjct: 112 ESHVQGRIIEV 122
>U28944-7|AAN63457.1| 295|Caenorhabditis elegans Hypothetical
protein C18A3.5f protein.
Length = 295
Score = 37.9 bits (84), Expect = 0.011
Identities = 20/76 (26%), Positives = 39/76 (51%)
Frame = +3
Query: 180 Y*TMSSGGTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFMEFENLQEAED 359
Y S T VYVG + + ++++ + F +G++ V + G+AF++F+N A
Sbjct: 120 YNQTSGDNTSVYVGNIAS-LTEDEIRQGFASFGRITEVRI-FKMQGYAFVKFDNKDAAAK 177
Query: 360 ACSAMNGTEMLGATLK 407
A MN ++ G ++
Sbjct: 178 AIVQMNNQDVGGQLVR 193
Score = 30.3 bits (65), Expect = 2.1
Identities = 17/62 (27%), Positives = 27/62 (43%), Gaps = 5/62 (8%)
Frame = +3
Query: 210 VYVGGLVEGIKKEDLEREFDKYGKLNSVWV-----ALNPPGFAFMEFENLQEAEDACSAM 374
V+VG L + + L F +G ++ V G+ F+ + +EAE A M
Sbjct: 24 VFVGDLSSEVDNQKLREAFQPFGDVSDAKVIRDTNTTKSKGYGFVSYPKREEAERAIEQM 83
Query: 375 NG 380
NG
Sbjct: 84 NG 85
>U28944-6|AAN63456.1| 305|Caenorhabditis elegans Hypothetical
protein C18A3.5e protein.
Length = 305
Score = 37.9 bits (84), Expect = 0.011
Identities = 20/76 (26%), Positives = 39/76 (51%)
Frame = +3
Query: 180 Y*TMSSGGTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFMEFENLQEAED 359
Y S T VYVG + + ++++ + F +G++ V + G+AF++F+N A
Sbjct: 130 YNQTSGDNTSVYVGNIAS-LTEDEIRQGFASFGRITEVRI-FKMQGYAFVKFDNKDAAAK 187
Query: 360 ACSAMNGTEMLGATLK 407
A MN ++ G ++
Sbjct: 188 AIVQMNNQDVGGQLVR 203
Score = 30.3 bits (65), Expect = 2.1
Identities = 17/62 (27%), Positives = 27/62 (43%), Gaps = 5/62 (8%)
Frame = +3
Query: 210 VYVGGLVEGIKKEDLEREFDKYGKLNSVWV-----ALNPPGFAFMEFENLQEAEDACSAM 374
V+VG L + + L F +G ++ V G+ F+ + +EAE A M
Sbjct: 34 VFVGDLSSEVDNQKLREAFQPFGDVSDAKVIRDTNTTKSKGYGFVSYPKREEAERAIEQM 93
Query: 375 NG 380
NG
Sbjct: 94 NG 95
>U28944-5|AAK68191.1| 408|Caenorhabditis elegans Hypothetical
protein C18A3.5a protein.
Length = 408
Score = 37.9 bits (84), Expect = 0.011
Identities = 20/76 (26%), Positives = 39/76 (51%)
Frame = +3
Query: 180 Y*TMSSGGTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFMEFENLQEAED 359
Y S T VYVG + + ++++ + F +G++ V + G+AF++F+N A
Sbjct: 233 YNQTSGDNTSVYVGNIAS-LTEDEIRQGFASFGRITEVRI-FKMQGYAFVKFDNKDAAAK 290
Query: 360 ACSAMNGTEMLGATLK 407
A MN ++ G ++
Sbjct: 291 AIVQMNNQDVGGQLVR 306
Score = 30.3 bits (65), Expect = 2.1
Identities = 20/70 (28%), Positives = 34/70 (48%), Gaps = 3/70 (4%)
Frame = +3
Query: 210 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVAL---NPPGFAFMEFENLQEAEDACSAMNG 380
+YVG L + ++ + F++ G + V N P +AF+EF + +A A MN
Sbjct: 48 LYVGNLDSTVTEDFIATLFNQIGSVTKTKVIFDGSNDP-YAFVEFSDHGQASQALQTMNK 106
Query: 381 TEMLGATLKV 410
+L +KV
Sbjct: 107 RLLLDREMKV 116
Score = 30.3 bits (65), Expect = 2.1
Identities = 17/62 (27%), Positives = 27/62 (43%), Gaps = 5/62 (8%)
Frame = +3
Query: 210 VYVGGLVEGIKKEDLEREFDKYGKLNSVWV-----ALNPPGFAFMEFENLQEAEDACSAM 374
V+VG L + + L F +G ++ V G+ F+ + +EAE A M
Sbjct: 137 VFVGDLSSEVDNQKLREAFQPFGDVSDAKVIRDTNTTKSKGYGFVSYPKREEAERAIEQM 196
Query: 375 NG 380
NG
Sbjct: 197 NG 198
>U28944-4|AAK68192.1| 376|Caenorhabditis elegans Hypothetical
protein C18A3.5b protein.
Length = 376
Score = 37.9 bits (84), Expect = 0.011
Identities = 20/76 (26%), Positives = 39/76 (51%)
Frame = +3
Query: 180 Y*TMSSGGTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFMEFENLQEAED 359
Y S T VYVG + + ++++ + F +G++ V + G+AF++F+N A
Sbjct: 201 YNQTSGDNTSVYVGNIAS-LTEDEIRQGFASFGRITEVRI-FKMQGYAFVKFDNKDAAAK 258
Query: 360 ACSAMNGTEMLGATLK 407
A MN ++ G ++
Sbjct: 259 AIVQMNNQDVGGQLVR 274
Score = 30.3 bits (65), Expect = 2.1
Identities = 17/62 (27%), Positives = 27/62 (43%), Gaps = 5/62 (8%)
Frame = +3
Query: 210 VYVGGLVEGIKKEDLEREFDKYGKLNSVWV-----ALNPPGFAFMEFENLQEAEDACSAM 374
V+VG L + + L F +G ++ V G+ F+ + +EAE A M
Sbjct: 105 VFVGDLSSEVDNQKLREAFQPFGDVSDAKVIRDTNTTKSKGYGFVSYPKREEAERAIEQM 164
Query: 375 NG 380
NG
Sbjct: 165 NG 166
>Z50044-2|CAA90354.1| 256|Caenorhabditis elegans Hypothetical
protein F22B5.2 protein.
Length = 256
Score = 37.5 bits (83), Expect = 0.014
Identities = 22/71 (30%), Positives = 38/71 (53%), Gaps = 5/71 (7%)
Frame = +3
Query: 216 VGGLVEGIKKEDLEREFDKYGKLNSVWVALN-----PPGFAFMEFENLQEAEDACSAMNG 380
V L + + +++L F K G++ +++A + P GFAF+ FE+ +A A + +N
Sbjct: 180 VTNLPQEMNEDELRDLFGKIGRVIRIFIARDKVTGLPKGFAFVTFESRDDAARAIAELND 239
Query: 381 TEMLGATLKVE 413
M LKVE
Sbjct: 240 IRMYHMVLKVE 250
>U41531-7|AAA83161.2| 415|Caenorhabditis elegans Feminizing gene on
x protein 1 protein.
Length = 415
Score = 37.5 bits (83), Expect = 0.014
Identities = 21/74 (28%), Positives = 39/74 (52%), Gaps = 3/74 (4%)
Frame = +3
Query: 198 GGTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN---PPGFAFMEFENLQEAEDACS 368
G R++V + + DL+ F+K+G ++ V + N GF F+ E Q+AE A
Sbjct: 151 GPKRLHVSNIPFRFRDPDLKTMFEKFGVVSDVEIIFNERGSKGFGFVTMERPQDAERARQ 210
Query: 369 AMNGTEMLGATLKV 410
++G+ + G ++V
Sbjct: 211 ELHGSMIEGRKIEV 224
>U14946-1|AAA67723.1| 415|Caenorhabditis elegans ribonucleoprotein
protein.
Length = 415
Score = 37.5 bits (83), Expect = 0.014
Identities = 21/74 (28%), Positives = 39/74 (52%), Gaps = 3/74 (4%)
Frame = +3
Query: 198 GGTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN---PPGFAFMEFENLQEAEDACS 368
G R++V + + DL+ F+K+G ++ V + N GF F+ E Q+AE A
Sbjct: 151 GPKRLHVSNIPFRFRDPDLKTMFEKFGVVSDVEIIFNERGSKGFGFVTMERPQDAERARQ 210
Query: 369 AMNGTEMLGATLKV 410
++G+ + G ++V
Sbjct: 211 ELHGSMIEGRKIEV 224
>AF098993-1|AAC67471.2| 367|Caenorhabditis elegans Zinc finger
transcription factorfamily protein 4 protein.
Length = 367
Score = 37.5 bits (83), Expect = 0.014
Identities = 19/72 (26%), Positives = 37/72 (51%), Gaps = 1/72 (1%)
Frame = +3
Query: 207 RVYVGGLVEGI-KKEDLEREFDKYGKLNSVWVALNPPGFAFMEFENLQEAEDACSAMNGT 383
RV++G + I ++D+ F +GK+ +V GF F++F A+++C ++NG
Sbjct: 84 RVFIGNIARAIITRDDIIELFRPFGKIIAVNYFAQQ-GFGFVQFNEAGSADESCRSLNGM 142
Query: 384 EMLGATLKVEIS 419
L V ++
Sbjct: 143 SWKACCLDVHLA 154
>Z36238-3|CAA85276.1| 404|Caenorhabditis elegans Hypothetical
protein R74.5a protein.
Length = 404
Score = 37.1 bits (82), Expect = 0.018
Identities = 21/79 (26%), Positives = 40/79 (50%), Gaps = 3/79 (3%)
Frame = +3
Query: 192 SSGGTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN---PPGFAFMEFENLQEAEDA 362
+ G R++V + ++ DL F+K G + V + N GF F+ +N +A+ A
Sbjct: 96 TDGPRRLHVSNIPFKYREPDLTAMFEKVGPVVDVEIIFNERGSKGFGFVTMQNPDDADRA 155
Query: 363 CSAMNGTEMLGATLKVEIS 419
+ NGT + G ++V ++
Sbjct: 156 RAEFNGTTIEGRRVEVNLA 174
>U00052-10|AAK21429.2| 289|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 5 protein.
Length = 289
Score = 37.1 bits (82), Expect = 0.018
Identities = 22/82 (26%), Positives = 43/82 (52%), Gaps = 6/82 (7%)
Frame = +3
Query: 192 SSGGTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNP------PGFAFMEFENLQEA 353
+S RV + L + K LE F YG + +V + + G+ ++E++NL++A
Sbjct: 129 ASPAKRVVIKNLSRNVLKTHLEEIFSIYGAIKNVDLPPDRFHNHVHRGYGYVEYDNLEDA 188
Query: 354 EDACSAMNGTEMLGATLKVEIS 419
E + M+G ++ G + VE++
Sbjct: 189 EKSIKHMDGGQIDGMAVHVEMT 210
>DQ485531-1|ABF22491.1| 404|Caenorhabditis elegans RNA-binding
protein ASD-1 protein.
Length = 404
Score = 37.1 bits (82), Expect = 0.018
Identities = 21/79 (26%), Positives = 40/79 (50%), Gaps = 3/79 (3%)
Frame = +3
Query: 192 SSGGTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN---PPGFAFMEFENLQEAEDA 362
+ G R++V + ++ DL F+K G + V + N GF F+ +N +A+ A
Sbjct: 96 TDGPRRLHVSNIPFKYREPDLTAMFEKVGPVVDVEIIFNERGSKGFGFVTMQNPDDADRA 155
Query: 363 CSAMNGTEMLGATLKVEIS 419
+ NGT + G ++V ++
Sbjct: 156 RAEFNGTTIEGRRVEVNLA 174
>U80455-2|AAB37882.2| 420|Caenorhabditis elegans Elav-type rna
binding protein familyprotein 1, isoform b protein.
Length = 420
Score = 36.3 bits (80), Expect = 0.032
Identities = 23/77 (29%), Positives = 38/77 (49%), Gaps = 5/77 (6%)
Frame = +3
Query: 201 GTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPG-----FAFMEFENLQEAEDAC 365
G +++ L + DL F +G + S V ++ F F+ +EN Q A +A
Sbjct: 334 GANLFIYHLPQDFGDSDLINTFAPFGGILSAKVFIDKVTNLSKCFGFVSYENAQSATNAI 393
Query: 366 SAMNGTEMLGATLKVEI 416
SAMNG ++ LKV++
Sbjct: 394 SAMNGFQIGSKRLKVQL 410
>U80455-1|AAB37881.1| 584|Caenorhabditis elegans Elav-type rna
binding protein familyprotein 1, isoform a protein.
Length = 584
Score = 36.3 bits (80), Expect = 0.032
Identities = 23/77 (29%), Positives = 38/77 (49%), Gaps = 5/77 (6%)
Frame = +3
Query: 201 GTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPG-----FAFMEFENLQEAEDAC 365
G +++ L + DL F +G + S V ++ F F+ +EN Q A +A
Sbjct: 498 GANLFIYHLPQDFGDSDLINTFAPFGGILSAKVFIDKVTNLSKCFGFVSYENAQSATNAI 557
Query: 366 SAMNGTEMLGATLKVEI 416
SAMNG ++ LKV++
Sbjct: 558 SAMNGFQIGSKRLKVQL 574
>U53931-1|AAA98566.1| 584|Caenorhabditis elegans elav-type
ribonucleoprotein protein.
Length = 584
Score = 36.3 bits (80), Expect = 0.032
Identities = 23/77 (29%), Positives = 38/77 (49%), Gaps = 5/77 (6%)
Frame = +3
Query: 201 GTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPG-----FAFMEFENLQEAEDAC 365
G +++ L + DL F +G + S V ++ F F+ +EN Q A +A
Sbjct: 498 GANLFIYHLPQDFGDSDLINTFAPFGGILSAKVFIDKVTNLSKCFGFVSYENAQSATNAI 557
Query: 366 SAMNGTEMLGATLKVEI 416
SAMNG ++ LKV++
Sbjct: 558 SAMNGFQIGSKRLKVQL 574
>U21320-5|AAA62536.2| 332|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 7 protein.
Length = 332
Score = 36.3 bits (80), Expect = 0.032
Identities = 21/72 (29%), Positives = 37/72 (51%), Gaps = 4/72 (5%)
Frame = +3
Query: 210 VYVGGLVEGIKKEDLEREFDKYGKLNSVWV----ALNPPGFAFMEFENLQEAEDACSAMN 377
++VG + + L REF+ YGK+ + + A P G+AF+E+ + E A +
Sbjct: 106 LFVGRINYETSESKLRREFEAYGKIKKLTMVHDEAGKPRGYAFIEYSDKAEMHTAYKKAD 165
Query: 378 GTEMLGATLKVE 413
G ++ G L V+
Sbjct: 166 GIKVDGKRLVVD 177
>EF523770-1|ABS18836.1| 513|Caenorhabditis elegans ELAV-type RNA
binding protein variantE protein.
Length = 513
Score = 36.3 bits (80), Expect = 0.032
Identities = 23/77 (29%), Positives = 38/77 (49%), Gaps = 5/77 (6%)
Frame = +3
Query: 201 GTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPG-----FAFMEFENLQEAEDAC 365
G +++ L + DL F +G + S V ++ F F+ +EN Q A +A
Sbjct: 427 GANLFIYHLPQDFGDSDLINTFAPFGGILSAKVFIDKVTNLSKCFGFVSYENAQSATNAI 486
Query: 366 SAMNGTEMLGATLKVEI 416
SAMNG ++ LKV++
Sbjct: 487 SAMNGFQIGSKRLKVQL 503
>EF523766-1|ABS18832.1| 584|Caenorhabditis elegans ELAV-type RNA
binding protein variantA protein.
Length = 584
Score = 36.3 bits (80), Expect = 0.032
Identities = 23/77 (29%), Positives = 38/77 (49%), Gaps = 5/77 (6%)
Frame = +3
Query: 201 GTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPG-----FAFMEFENLQEAEDAC 365
G +++ L + DL F +G + S V ++ F F+ +EN Q A +A
Sbjct: 498 GANLFIYHLPQDFGDSDLINTFAPFGGILSAKVFIDKVTNLSKCFGFVSYENAQSATNAI 557
Query: 366 SAMNGTEMLGATLKVEI 416
SAMNG ++ LKV++
Sbjct: 558 SAMNGFQIGSKRLKVQL 574
>AC024826-10|AAM97977.1| 435|Caenorhabditis elegans Hypothetical
protein Y55F3AM.3c protein.
Length = 435
Score = 36.3 bits (80), Expect = 0.032
Identities = 19/79 (24%), Positives = 40/79 (50%), Gaps = 4/79 (5%)
Frame = +3
Query: 192 SSGGTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPP----GFAFMEFENLQEAED 359
+ G T V V L I ++ + F+ +G++ + + ++ GFA + F N +A+
Sbjct: 123 NKGPTHVLVENLHPKIDEKMIRDIFESFGRIEKIDLEVDSNRENRGFATITFRNADDAQK 182
Query: 360 ACSAMNGTEMLGATLKVEI 416
+C +N E+ G +++ I
Sbjct: 183 SCEQLNNFELAGRCIRLSI 201
>AC024826-8|AAF60795.2| 580|Caenorhabditis elegans Hypothetical
protein Y55F3AM.3a protein.
Length = 580
Score = 36.3 bits (80), Expect = 0.032
Identities = 19/79 (24%), Positives = 40/79 (50%), Gaps = 4/79 (5%)
Frame = +3
Query: 192 SSGGTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPP----GFAFMEFENLQEAED 359
+ G T V V L I ++ + F+ +G++ + + ++ GFA + F N +A+
Sbjct: 268 NKGPTHVLVENLHPKIDEKMIRDIFESFGRIEKIDLEVDSNRENRGFATITFRNADDAQK 327
Query: 360 ACSAMNGTEMLGATLKVEI 416
+C +N E+ G +++ I
Sbjct: 328 SCEQLNNFELAGRCIRLSI 346
>Z81037-3|CAB02750.1| 205|Caenorhabditis elegans Hypothetical
protein C17E4.5 protein.
Length = 205
Score = 35.9 bits (79), Expect = 0.043
Identities = 22/73 (30%), Positives = 39/73 (53%), Gaps = 5/73 (6%)
Frame = +3
Query: 210 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN-----PPGFAFMEFENLQEAEDACSAM 374
VYVG + G E++E+ F G ++ V + + P GFA++EF + ++A AM
Sbjct: 80 VYVGNVDYGATAEEIEQHFHGCGSVSRVTIQCDRFSGHPKGFAYVEFTEKEGMQNAL-AM 138
Query: 375 NGTEMLGATLKVE 413
+ + G +KV+
Sbjct: 139 TDSLLRGRQIKVD 151
>Z50110-2|CAA90446.1| 566|Caenorhabditis elegans Hypothetical
protein F18H3.3b protein.
Length = 566
Score = 35.9 bits (79), Expect = 0.043
Identities = 21/75 (28%), Positives = 35/75 (46%), Gaps = 4/75 (5%)
Frame = +3
Query: 204 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN----PPGFAFMEFENLQEAEDACSA 371
T V+V E + +E L F K+G++ S V + P GF F+ F + A A
Sbjct: 238 TNVFVKNFGEHLDQEKLSAMFSKFGEITSAVVMTDAQGKPKGFGFVAFADQDAAGQAVEK 297
Query: 372 MNGTEMLGATLKVEI 416
+N + + G K+ +
Sbjct: 298 LNDSILEGTDCKLSV 312
>Z50110-1|CAA90444.1| 692|Caenorhabditis elegans Hypothetical
protein F18H3.3a protein.
Length = 692
Score = 35.9 bits (79), Expect = 0.043
Identities = 21/75 (28%), Positives = 35/75 (46%), Gaps = 4/75 (5%)
Frame = +3
Query: 204 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN----PPGFAFMEFENLQEAEDACSA 371
T V+V E + +E L F K+G++ S V + P GF F+ F + A A
Sbjct: 238 TNVFVKNFGEHLDQEKLSAMFSKFGEITSAVVMTDAQGKPKGFGFVAFADQDAAGQAVEK 297
Query: 372 MNGTEMLGATLKVEI 416
+N + + G K+ +
Sbjct: 298 LNDSILEGTDCKLSV 312
>AL137227-1|CAB70238.2| 611|Caenorhabditis elegans Hypothetical
protein F58D5.1 protein.
Length = 611
Score = 35.9 bits (79), Expect = 0.043
Identities = 23/79 (29%), Positives = 42/79 (53%), Gaps = 6/79 (7%)
Frame = +3
Query: 201 GTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNP-----PGFAFMEFENLQEAEDAC 365
G +YVG + + ++ L F+K GK+ + + ++P G+AF+ + N ++A A
Sbjct: 199 GHEIYVGHIPTDVFEDTLVPLFEKSGKIWDLRLMMDPMSGASRGYAFVTYCNKEDAAAAA 258
Query: 366 SAMNGTEM-LGATLKVEIS 419
+G E+ G LKV +S
Sbjct: 259 KTYDGHEISTGKPLKVNVS 277
>Z83127-4|CAB05631.1| 872|Caenorhabditis elegans Hypothetical
protein T23F6.4 protein.
Length = 872
Score = 35.1 bits (77), Expect = 0.075
Identities = 22/73 (30%), Positives = 39/73 (53%), Gaps = 5/73 (6%)
Frame = +3
Query: 207 RVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNP-----PGFAFMEFENLQEAEDACSA 371
R+++ L K++DL+ F KYG+++ V V ++ GFA +EF + A A SA
Sbjct: 280 RLFLRNLPYATKEDDLQFLFKKYGEVSEVQVVIDKKTGACKGFAIVEFVFPEAAVAAYSA 339
Query: 372 MNGTEMLGATLKV 410
++G G + +
Sbjct: 340 LDGYVFKGRMMHI 352
Score = 29.5 bits (63), Expect = 3.7
Identities = 21/74 (28%), Positives = 34/74 (45%), Gaps = 4/74 (5%)
Frame = +3
Query: 204 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPP----GFAFMEFENLQEAEDACSA 371
TR+ V L ++ L + F+KYG+++ + GFAF+ F + A +A +
Sbjct: 3 TRLIVKNLPSTCTEQQLRKFFEKYGQISDASLKYTKEGKFRGFAFVGFLDEGSASNALAK 62
Query: 372 MNGTEMLGATLKVE 413
N T L VE
Sbjct: 63 SNQTFFNSKKLTVE 76
>AC084197-11|AAM44397.1| 305|Caenorhabditis elegans Homologous to
drosophila sqd (squid)protein protein 1, isoform a
protein.
Length = 305
Score = 34.7 bits (76), Expect = 0.099
Identities = 20/64 (31%), Positives = 33/64 (51%), Gaps = 5/64 (7%)
Frame = +3
Query: 207 RVYVGGLVEGIKKEDLEREFDKYGKLNSV-W----VALNPPGFAFMEFENLQEAEDACSA 371
+V+VGGL ++DL F+++GK++ + W FAF+ FE + A+ A S
Sbjct: 111 KVFVGGLPSDYSEQDLRSHFEQFGKVDDIEWPFDKQTKARRNFAFIVFEEEESADKASSQ 170
Query: 372 MNGT 383
T
Sbjct: 171 TKQT 174
Score = 33.9 bits (74), Expect = 0.17
Identities = 22/81 (27%), Positives = 41/81 (50%), Gaps = 5/81 (6%)
Frame = +3
Query: 186 TMSSGGTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN-----PPGFAFMEFENLQE 350
T + +++VGG+ + EDL F +YG++ V + GFAF+EF +
Sbjct: 23 TKGNEDKKIFVGGISPEVNNEDLSSHFTQYGEVAQAQVKYDRTNGRSRGFAFVEFTTGEG 82
Query: 351 AEDACSAMNGTEMLGATLKVE 413
+ A +A T + G +++V+
Sbjct: 83 CKLALAAREQT-IKGKSVEVK 102
>AC084197-10|AAY43984.1| 308|Caenorhabditis elegans Homologous to
drosophila sqd (squid)protein protein 1, isoform b
protein.
Length = 308
Score = 34.7 bits (76), Expect = 0.099
Identities = 20/64 (31%), Positives = 33/64 (51%), Gaps = 5/64 (7%)
Frame = +3
Query: 207 RVYVGGLVEGIKKEDLEREFDKYGKLNSV-W----VALNPPGFAFMEFENLQEAEDACSA 371
+V+VGGL ++DL F+++GK++ + W FAF+ FE + A+ A S
Sbjct: 111 KVFVGGLPSDYSEQDLRSHFEQFGKVDDIEWPFDKQTKARRNFAFIVFEEEESADKASSQ 170
Query: 372 MNGT 383
T
Sbjct: 171 TKQT 174
Score = 33.9 bits (74), Expect = 0.17
Identities = 22/81 (27%), Positives = 41/81 (50%), Gaps = 5/81 (6%)
Frame = +3
Query: 186 TMSSGGTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN-----PPGFAFMEFENLQE 350
T + +++VGG+ + EDL F +YG++ V + GFAF+EF +
Sbjct: 23 TKGNEDKKIFVGGISPEVNNEDLSSHFTQYGEVAQAQVKYDRTNGRSRGFAFVEFTTGEG 82
Query: 351 AEDACSAMNGTEMLGATLKVE 413
+ A +A T + G +++V+
Sbjct: 83 CKLALAAREQT-IKGKSVEVK 102
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical
protein C08B11.5 protein.
Length = 388
Score = 34.3 bits (75), Expect = 0.13
Identities = 23/72 (31%), Positives = 36/72 (50%), Gaps = 5/72 (6%)
Frame = +3
Query: 210 VYVGGLVEGIKKEDLEREFDKYGKLNSV-----WVALNPPGFAFMEFENLQEAEDACSAM 374
+YVGGL E + + L + G + SV V N GF F+EF ++A+ A +
Sbjct: 15 IYVGGLDEKVSESILWELMVQAGPVVSVNMPKDRVTANHQGFGFVEFMGEEDADYAIKIL 74
Query: 375 NGTEMLGATLKV 410
N ++ G +KV
Sbjct: 75 NMIKLYGKPIKV 86
Score = 29.5 bits (63), Expect = 3.7
Identities = 19/76 (25%), Positives = 34/76 (44%), Gaps = 6/76 (7%)
Frame = +3
Query: 201 GTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNP------PGFAFMEFENLQEAEDA 362
G ++VG L + ++ L F +G + V + GFAF+ F + + ++ A
Sbjct: 99 GANIFVGNLDPEVDEKLLYDTFSAFGVILQVPKIMRDVDSGTSKGFAFINFASFEASDTA 158
Query: 363 CSAMNGTEMLGATLKV 410
AMNG + + V
Sbjct: 159 LEAMNGQFLCNRAITV 174
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA
binding protein protein.
Length = 398
Score = 34.3 bits (75), Expect = 0.13
Identities = 23/72 (31%), Positives = 36/72 (50%), Gaps = 5/72 (6%)
Frame = +3
Query: 210 VYVGGLVEGIKKEDLEREFDKYGKLNSV-----WVALNPPGFAFMEFENLQEAEDACSAM 374
+YVGGL E + + L + G + SV V N GF F+EF ++A+ A +
Sbjct: 25 IYVGGLDEKVSESILWELMVQAGPVVSVNMPKDRVTANHQGFGFVEFMGEEDADYAIKIL 84
Query: 375 NGTEMLGATLKV 410
N ++ G +KV
Sbjct: 85 NMIKLYGKPIKV 96
Score = 29.5 bits (63), Expect = 3.7
Identities = 19/76 (25%), Positives = 34/76 (44%), Gaps = 6/76 (7%)
Frame = +3
Query: 201 GTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNP------PGFAFMEFENLQEAEDA 362
G ++VG L + ++ L F +G + V + GFAF+ F + + ++ A
Sbjct: 109 GANIFVGNLDPEVDEKLLYDTFSAFGVILQVPKIMRDVDSGTSKGFAFINFASFEASDTA 168
Query: 363 CSAMNGTEMLGATLKV 410
AMNG + + V
Sbjct: 169 LEAMNGQFLCNRAITV 184
>Z36752-6|CAA85327.1| 456|Caenorhabditis elegans Hypothetical
protein F35H8.5 protein.
Length = 456
Score = 33.5 bits (73), Expect = 0.23
Identities = 14/32 (43%), Positives = 21/32 (65%)
Frame = +3
Query: 315 GFAFMEFENLQEAEDACSAMNGTEMLGATLKV 410
G+AF+ N EA +A ++NGT + G TL+V
Sbjct: 415 GYAFVSMSNYTEAYNAMLSLNGTNLAGKTLQV 446
Score = 29.1 bits (62), Expect = 4.9
Identities = 17/74 (22%), Positives = 36/74 (48%), Gaps = 5/74 (6%)
Frame = +3
Query: 204 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPP-----GFAFMEFENLQEAEDACS 368
T + + L +G+ +E++ F G++ S + + G+ F+ + ++A A S
Sbjct: 42 TNLIINYLPQGMTQEEVRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVREEDALRAVS 101
Query: 369 AMNGTEMLGATLKV 410
+ NG + T+KV
Sbjct: 102 SFNGLRLQNKTIKV 115
>Z35601-1|CAA84667.2| 320|Caenorhabditis elegans Hypothetical
protein R10E9.1 protein.
Length = 320
Score = 33.5 bits (73), Expect = 0.23
Identities = 16/58 (27%), Positives = 31/58 (53%), Gaps = 5/58 (8%)
Frame = +3
Query: 207 RVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPP-----GFAFMEFENLQEAEDAC 365
+V++GGL ED+++ F+ YGK+ + + GF F+ F++ + A+ C
Sbjct: 135 KVFIGGLSATSTLEDMKQYFETYGKVEDAMLMFDKATQRHRGFGFVTFDSDEVADKVC 192
>AB036738-1|BAB13470.1| 320|Caenorhabditis elegans neural
RNA-binding protein MSI-1 protein.
Length = 320
Score = 33.5 bits (73), Expect = 0.23
Identities = 16/58 (27%), Positives = 31/58 (53%), Gaps = 5/58 (8%)
Frame = +3
Query: 207 RVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPP-----GFAFMEFENLQEAEDAC 365
+V++GGL ED+++ F+ YGK+ + + GF F+ F++ + A+ C
Sbjct: 135 KVFIGGLSATSTLEDMKQYFETYGKVEDAMLMFDKATQRHRGFGFVTFDSDEVADKVC 192
>Z81120-1|CAB03342.1| 207|Caenorhabditis elegans Hypothetical
protein T12D8.2 protein.
Length = 207
Score = 31.9 bits (69), Expect = 0.70
Identities = 14/32 (43%), Positives = 19/32 (59%)
Frame = +3
Query: 315 GFAFMEFENLQEAEDACSAMNGTEMLGATLKV 410
GFA++ FEN Q+ A S +NG + LKV
Sbjct: 54 GFAYVTFENEQQMNTAISGLNGADFGNRVLKV 85
>U23450-1|AAK31467.2| 422|Caenorhabditis elegans Cpeb polya binding
family protein 2 protein.
Length = 422
Score = 31.5 bits (68), Expect = 0.92
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = +3
Query: 207 RVYVGGLVEGIKKEDLEREFDKYGKLNSVW 296
+V+VGGL +K+ D+ F +YG+L W
Sbjct: 89 KVFVGGLPSCVKESDILNFFSRYGRLQVDW 118
>Z97628-2|CAB10726.2| 427|Caenorhabditis elegans Hypothetical
protein F39H2.2a protein.
Length = 427
Score = 30.3 bits (65), Expect = 2.1
Identities = 18/63 (28%), Positives = 32/63 (50%), Gaps = 5/63 (7%)
Frame = +3
Query: 246 EDLEREFDKYGKLNSVWVALNPPG-----FAFMEFENLQEAEDACSAMNGTEMLGATLKV 410
EDLE F ++GK+N+ + + +AF+EF+N + E A M+ + + V
Sbjct: 255 EDLEIIFSRFGKINNCEIVRDRRSGDSLQYAFIEFDNAKSCEQAFFKMDNVLIDDRRIHV 314
Query: 411 EIS 419
+ S
Sbjct: 315 DFS 317
>Z81080-5|CAB03088.2| 427|Caenorhabditis elegans Hypothetical
protein F39H2.2a protein.
Length = 427
Score = 30.3 bits (65), Expect = 2.1
Identities = 18/63 (28%), Positives = 32/63 (50%), Gaps = 5/63 (7%)
Frame = +3
Query: 246 EDLEREFDKYGKLNSVWVALNPPG-----FAFMEFENLQEAEDACSAMNGTEMLGATLKV 410
EDLE F ++GK+N+ + + +AF+EF+N + E A M+ + + V
Sbjct: 255 EDLEIIFSRFGKINNCEIVRDRRSGDSLQYAFIEFDNAKSCEQAFFKMDNVLIDDRRIHV 314
Query: 411 EIS 419
+ S
Sbjct: 315 DFS 317
>Z81080-2|CAD56584.1| 358|Caenorhabditis elegans Hypothetical
protein F39H2.2b protein.
Length = 358
Score = 30.3 bits (65), Expect = 2.1
Identities = 18/63 (28%), Positives = 32/63 (50%), Gaps = 5/63 (7%)
Frame = +3
Query: 246 EDLEREFDKYGKLNSVWVALNPPG-----FAFMEFENLQEAEDACSAMNGTEMLGATLKV 410
EDLE F ++GK+N+ + + +AF+EF+N + E A M+ + + V
Sbjct: 186 EDLEIIFSRFGKINNCEIVRDRRSGDSLQYAFIEFDNAKSCEQAFFKMDNVLIDDRRIHV 245
Query: 411 EIS 419
+ S
Sbjct: 246 DFS 248
>Z78419-2|CAB01702.1| 154|Caenorhabditis elegans Hypothetical
protein F26A3.2 protein.
Length = 154
Score = 30.3 bits (65), Expect = 2.1
Identities = 19/65 (29%), Positives = 33/65 (50%), Gaps = 5/65 (7%)
Frame = +3
Query: 210 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN-----PPGFAFMEFENLQEAEDACSAM 374
+YVG L K++ + F + G + V + L+ P GF F+E+ ++AE A +
Sbjct: 39 LYVGNLSYYTKEDQVYELFGRAGDVRRVIMGLDRFKKTPCGFCFVEYYTREDAELALQNI 98
Query: 375 NGTEM 389
+ T M
Sbjct: 99 SNTRM 103
>Z36238-4|CAD82915.1| 286|Caenorhabditis elegans Hypothetical
protein R74.5b protein.
Length = 286
Score = 29.9 bits (64), Expect = 2.8
Identities = 16/55 (29%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
Frame = +3
Query: 264 FDKYGKLNSVWVALNP---PGFAFMEFENLQEAEDACSAMNGTEMLGATLKVEIS 419
F+K G + V + N GF F+ +N +A+ A + NGT + G ++V ++
Sbjct: 2 FEKVGPVVDVEIIFNERGSKGFGFVTMQNPDDADRARAEFNGTTIEGRRVEVNLA 56
>U55857-6|AAA98032.2| 206|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 2 protein.
Length = 206
Score = 29.9 bits (64), Expect = 2.8
Identities = 18/69 (26%), Positives = 35/69 (50%), Gaps = 1/69 (1%)
Frame = +3
Query: 210 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFMEFENLQEAEDACSAMNGTEM 389
++ L + E LE F+++ L + + N PG AF+EF+ A A + +N ++
Sbjct: 134 LFCTNLPDSATAEMLEIMFNQFAGLKDIRMVPNRPGIAFVEFDTDSLAIPARTTLNNFKI 193
Query: 390 LGA-TLKVE 413
T++V+
Sbjct: 194 SAEHTMRVD 202
>U39853-2|AAK39225.1| 771|Caenorhabditis elegans Kinase suppressor
of activatedras protein 1 protein.
Length = 771
Score = 29.9 bits (64), Expect = 2.8
Identities = 20/66 (30%), Positives = 29/66 (43%), Gaps = 1/66 (1%)
Frame = -2
Query: 394 PNISVPFIALHASSASCKFSNSMKAKPGGFSATQTEFSFPYLSNSRSRSSFLIPSTRP-P 218
P P A+ +SS++ + S A P G S + + PY RS FL P T
Sbjct: 307 PAFQFPDTAIDSSSSTNSSAPSTPALPAGISGNVSSLTAPY----RSERKFLFPDTENYS 362
Query: 217 TYTRVP 200
+ R+P
Sbjct: 363 VHNRLP 368
>U38820-1|AAA92436.1| 771|Caenorhabditis elegans KSR-1 protein.
Length = 771
Score = 29.9 bits (64), Expect = 2.8
Identities = 20/66 (30%), Positives = 29/66 (43%), Gaps = 1/66 (1%)
Frame = -2
Query: 394 PNISVPFIALHASSASCKFSNSMKAKPGGFSATQTEFSFPYLSNSRSRSSFLIPSTRP-P 218
P P A+ +SS++ + S A P G S + + PY RS FL P T
Sbjct: 307 PAFQFPDTAIDSSSSTNSSAPSTPALPAGISGNVSSLTAPY----RSERKFLFPDTENYS 362
Query: 217 TYTRVP 200
+ R+P
Sbjct: 363 VHNRLP 368
>S80647-1|AAB35769.1| 771|Caenorhabditis elegans KSR-1 protein.
Length = 771
Score = 29.9 bits (64), Expect = 2.8
Identities = 20/66 (30%), Positives = 29/66 (43%), Gaps = 1/66 (1%)
Frame = -2
Query: 394 PNISVPFIALHASSASCKFSNSMKAKPGGFSATQTEFSFPYLSNSRSRSSFLIPSTRP-P 218
P P A+ +SS++ + S A P G S + + PY RS FL P T
Sbjct: 307 PAFQFPDTAIDSSSSTNSSAPSTPALPAGISGNVSSLTAPY----RSERKFLFPDTENYS 362
Query: 217 TYTRVP 200
+ R+P
Sbjct: 363 VHNRLP 368
>D10877-1|BAA01645.1| 346|Caenorhabditis elegans hnRNP like protein
protein.
Length = 346
Score = 29.9 bits (64), Expect = 2.8
Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 5/58 (8%)
Frame = +3
Query: 207 RVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN-----PPGFAFMEFENLQEAEDAC 365
R+YV G+ E ++ L F KYG + + L+ P GF F+ F++ ++ D C
Sbjct: 115 RLYVSGVREDHTEDMLTEYFTKYGTVTKSEIILDKATQKPRGFGFVTFDD-HDSVDQC 171
>AF038613-8|AAL02515.2| 309|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform b protein.
Length = 309
Score = 29.9 bits (64), Expect = 2.8
Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 5/58 (8%)
Frame = +3
Query: 207 RVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN-----PPGFAFMEFENLQEAEDAC 365
R+YV G+ E ++ L F KYG + + L+ P GF F+ F++ ++ D C
Sbjct: 77 RLYVSGVREDHTEDMLTEYFTKYGTVTKSEIILDKATQKPRGFGFVTFDD-HDSVDQC 133
>AF038613-7|ABB51185.1| 308|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform c protein.
Length = 308
Score = 29.9 bits (64), Expect = 2.8
Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 5/58 (8%)
Frame = +3
Query: 207 RVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN-----PPGFAFMEFENLQEAEDAC 365
R+YV G+ E ++ L F KYG + + L+ P GF F+ F++ ++ D C
Sbjct: 77 RLYVSGVREDHTEDMLTEYFTKYGTVTKSEIILDKATQKPRGFGFVTFDD-HDSVDQC 133
>AF038613-6|ABB51186.1| 347|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform d protein.
Length = 347
Score = 29.9 bits (64), Expect = 2.8
Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 5/58 (8%)
Frame = +3
Query: 207 RVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN-----PPGFAFMEFENLQEAEDAC 365
R+YV G+ E ++ L F KYG + + L+ P GF F+ F++ ++ D C
Sbjct: 115 RLYVSGVREDHTEDMLTEYFTKYGTVTKSEIILDKATQKPRGFGFVTFDD-HDSVDQC 171
>AF038613-5|AAB92051.1| 346|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform a protein.
Length = 346
Score = 29.9 bits (64), Expect = 2.8
Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 5/58 (8%)
Frame = +3
Query: 207 RVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN-----PPGFAFMEFENLQEAEDAC 365
R+YV G+ E ++ L F KYG + + L+ P GF F+ F++ ++ D C
Sbjct: 115 RLYVSGVREDHTEDMLTEYFTKYGTVTKSEIILDKATQKPRGFGFVTFDD-HDSVDQC 171
>U55857-7|AAA98033.1| 217|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 3 protein.
Length = 217
Score = 29.5 bits (63), Expect = 3.7
Identities = 18/74 (24%), Positives = 37/74 (50%), Gaps = 6/74 (8%)
Frame = +3
Query: 210 VYVGGLVEGIKKEDLERE----FDKYGKLNSVWVALNPP--GFAFMEFENLQEAEDACSA 371
+YV L E +KK++L+R F ++G++ + G A + F+ + A +A A
Sbjct: 10 IYVNNLNEKVKKDELKRSLHMVFTQFGEIIQLMSFRKEKMRGQAHIVFKEVSSASNALRA 69
Query: 372 MNGTEMLGATLKVE 413
+ G G ++++
Sbjct: 70 LQGFPFYGKPMRIQ 83
Score = 29.5 bits (63), Expect = 3.7
Identities = 15/56 (26%), Positives = 29/56 (51%)
Frame = +3
Query: 210 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFMEFENLQEAEDACSAMN 377
++ + EG + E ++ F ++ L V N FAF+E+E+ +E A A++
Sbjct: 145 LFCSNIPEGTEPEQIQTIFSQFPGLREVRWMPNTKDFAFIEYESEDLSEPARQALD 200
>AC024844-6|AAK29956.1| 442|Caenorhabditis elegans Hypothetical
protein Y65B4A.1 protein.
Length = 442
Score = 29.5 bits (63), Expect = 3.7
Identities = 17/59 (28%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
Frame = +3
Query: 243 KEDLEREFDKYGKLNSVWVALN-PPGFAFMEFENLQEAEDACSAMNGTEMLGATLKVEI 416
KE++ + KYG + V V N P G + F +E++ A ++G + G L E+
Sbjct: 335 KEEMTQSCQKYGIVKKVVVYANHPDGVVSVTFPTTEESDMAVKYLHGRVVDGRKLTAEL 393
>U79157-1|AAC26982.1| 496|Caenorhabditis elegans splicing factor
U2AF65 protein.
Length = 496
Score = 29.1 bits (62), Expect = 4.9
Identities = 15/75 (20%), Positives = 39/75 (52%), Gaps = 4/75 (5%)
Frame = +3
Query: 207 RVYVGGLVEGIKKEDLEREFDKYGKLNSVWVAL----NPPGFAFMEFENLQEAEDACSAM 374
++++GGL + ++ ++ +G L + + + N G+AF E+ + + A + +
Sbjct: 292 KIFIGGLPNYLTEDQVKELLCSFGPLKAFSLNVDSQGNSKGYAFAEYLDPTLTDQAIAGL 351
Query: 375 NGTEMLGATLKVEIS 419
NG ++ L V+++
Sbjct: 352 NGMQLGDKQLVVQLA 366
>AC024875-3|AAK29989.1| 496|Caenorhabditis elegans U2af splicing
factor protein 1,isoform a protein.
Length = 496
Score = 29.1 bits (62), Expect = 4.9
Identities = 15/75 (20%), Positives = 39/75 (52%), Gaps = 4/75 (5%)
Frame = +3
Query: 207 RVYVGGLVEGIKKEDLEREFDKYGKLNSVWVAL----NPPGFAFMEFENLQEAEDACSAM 374
++++GGL + ++ ++ +G L + + + N G+AF E+ + + A + +
Sbjct: 292 KIFIGGLPNYLTEDQVKELLCSFGPLKAFSLNVDSQGNSKGYAFAEYLDPTLTDQAIAGL 351
Query: 375 NGTEMLGATLKVEIS 419
NG ++ L V+++
Sbjct: 352 NGMQLGDKQLVVQLA 366
>AC024875-2|AAM44400.1| 471|Caenorhabditis elegans U2af splicing
factor protein 1,isoform d protein.
Length = 471
Score = 29.1 bits (62), Expect = 4.9
Identities = 15/75 (20%), Positives = 39/75 (52%), Gaps = 4/75 (5%)
Frame = +3
Query: 207 RVYVGGLVEGIKKEDLEREFDKYGKLNSVWVAL----NPPGFAFMEFENLQEAEDACSAM 374
++++GGL + ++ ++ +G L + + + N G+AF E+ + + A + +
Sbjct: 267 KIFIGGLPNYLTEDQVKELLCSFGPLKAFSLNVDSQGNSKGYAFAEYLDPTLTDQAIAGL 326
Query: 375 NGTEMLGATLKVEIS 419
NG ++ L V+++
Sbjct: 327 NGMQLGDKQLVVQLA 341
>AC024875-1|AAL00879.1| 474|Caenorhabditis elegans U2af splicing
factor protein 1,isoform c protein.
Length = 474
Score = 29.1 bits (62), Expect = 4.9
Identities = 15/75 (20%), Positives = 39/75 (52%), Gaps = 4/75 (5%)
Frame = +3
Query: 207 RVYVGGLVEGIKKEDLEREFDKYGKLNSVWVAL----NPPGFAFMEFENLQEAEDACSAM 374
++++GGL + ++ ++ +G L + + + N G+AF E+ + + A + +
Sbjct: 270 KIFIGGLPNYLTEDQVKELLCSFGPLKAFSLNVDSQGNSKGYAFAEYLDPTLTDQAIAGL 329
Query: 375 NGTEMLGATLKVEIS 419
NG ++ L V+++
Sbjct: 330 NGMQLGDKQLVVQLA 344
>Z81473-3|CAB03896.4| 514|Caenorhabditis elegans Hypothetical
protein C17D12.2 protein.
Length = 514
Score = 28.7 bits (61), Expect = 6.5
Identities = 11/33 (33%), Positives = 22/33 (66%)
Frame = +3
Query: 318 FAFMEFENLQEAEDACSAMNGTEMLGATLKVEI 416
F F+ ++N+ ++ A +AMNG ++ LKV++
Sbjct: 472 FGFVSYDNIHSSQAAITAMNGFQIGMKRLKVQL 504
>U28928-13|AAL16321.1| 339|Caenorhabditis elegans Hypothetical
protein C44B7.2b protein.
Length = 339
Score = 28.7 bits (61), Expect = 6.5
Identities = 15/35 (42%), Positives = 23/35 (65%), Gaps = 2/35 (5%)
Frame = +3
Query: 321 AFMEFENLQEAEDACSAMNGTEMLG--ATLKVEIS 419
A +EFE+++ A+ A AMNG ++ TLKVE +
Sbjct: 163 ALVEFESMEVAKAAKHAMNGADIYSGCCTLKVEFA 197
>U28928-12|AAL16320.2| 597|Caenorhabditis elegans Hypothetical
protein C44B7.2a protein.
Length = 597
Score = 28.7 bits (61), Expect = 6.5
Identities = 15/35 (42%), Positives = 23/35 (65%), Gaps = 2/35 (5%)
Frame = +3
Query: 321 AFMEFENLQEAEDACSAMNGTEMLG--ATLKVEIS 419
A +EFE+++ A+ A AMNG ++ TLKVE +
Sbjct: 163 ALVEFESMEVAKAAKHAMNGADIYSGCCTLKVEFA 197
>AY342388-1|AAQ19851.1| 514|Caenorhabditis elegans putative
RNA-binding protein protein.
Length = 514
Score = 28.7 bits (61), Expect = 6.5
Identities = 11/33 (33%), Positives = 22/33 (66%)
Frame = +3
Query: 318 FAFMEFENLQEAEDACSAMNGTEMLGATLKVEI 416
F F+ ++N+ ++ A +AMNG ++ LKV++
Sbjct: 472 FGFVSYDNIHSSQAAITAMNGFQIGMKRLKVQL 504
>AF038618-2|AAB92072.1| 487|Caenorhabditis elegans Hypothetical
protein F42G8.8 protein.
Length = 487
Score = 28.3 bits (60), Expect = 8.6
Identities = 16/35 (45%), Positives = 18/35 (51%)
Frame = +3
Query: 309 PPGFAFMEFENLQEAEDACSAMNGTEMLGATLKVE 413
P GF F + L A MN T+ GATLKVE
Sbjct: 277 PEGFKFFADQKLLTIFSAPRYMNETDNHGATLKVE 311
>AC024793-5|AAF60689.1| 79|Caenorhabditis elegans Hypothetical
protein Y48G1BL.4 protein.
Length = 79
Score = 28.3 bits (60), Expect = 8.6
Identities = 16/51 (31%), Positives = 23/51 (45%)
Frame = +3
Query: 207 RVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFMEFENLQEAED 359
RVY+G D E F YGKL + N G +F++ +A+D
Sbjct: 3 RVYIGRFPNRASDRDAEHFFCDYGKLPDA-IMKNVFGVGCKDFQDQSDADD 52
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,041,685
Number of Sequences: 27780
Number of extensions: 240453
Number of successful extensions: 749
Number of sequences better than 10.0: 92
Number of HSP's better than 10.0 without gapping: 676
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 722
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2475644248
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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