Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP06_F_K12
         (929 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC320.07c |mde7||RNA-binding protein Mde7|Schizosaccharomyces ...    32   0.13 
SPBC660.13c |ssb1|rpa1, rad11|DNA replication factor A subunit S...    27   2.8  
SPCC584.11c |||Svf1 family protein Svf1|Schizosaccharomyces pomb...    27   3.8  
SPBC146.11c |mug97|meu33|meiotically upregulated gene Mug97|Schi...    27   5.0  
SPAC15A10.03c |rhp54|rad54|Rad54 homolog Rhp54|Schizosaccharomyc...    26   6.6  

>SPCC320.07c |mde7||RNA-binding protein Mde7|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 761

 Score = 31.9 bits (69), Expect = 0.13
 Identities = 19/64 (29%), Positives = 29/64 (45%)
 Frame = +3

Query: 30  GIP*DFDDTFLPGIISKTSTHEKCKIQKYNVLNSDVRRF*HTITRFKASKLYNNRLNNMS 209
           G+P DFDD  L GI +    ++  KI+  N     +  F + I   KA  + N    N  
Sbjct: 226 GLPDDFDDRELSGIFTFCEGYDFSKIESENGHRKAIVYFRNAIAALKAKNMLNASSTNNF 285

Query: 210 RLIR 221
            +I+
Sbjct: 286 TIIQ 289


>SPBC660.13c |ssb1|rpa1, rad11|DNA replication factor A subunit Ssb1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 609

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 11/35 (31%), Positives = 19/35 (54%)
 Frame = +3

Query: 528 FSSPNMKVFDVVLNGDHTIVADLDIFDKVGRGVAH 632
           + +P  +    +  GDHT    L++FD VG+ + H
Sbjct: 502 YDAPQYRYIITIAVGDHTGQLWLNVFDDVGKLIMH 536


>SPCC584.11c |||Svf1 family protein Svf1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 380

 Score = 27.1 bits (57), Expect = 3.8
 Identities = 18/65 (27%), Positives = 31/65 (47%), Gaps = 5/65 (7%)
 Frame = +3

Query: 258 TGLGEIIYAINAGGPAHT----DIYGIHYEK-DPLQGRIGTASDYGKQLVMIGRVNPKDE 422
           TG G  ++A+  G P H     +   + ++K   +  +  T   YG  +V IG +  KD+
Sbjct: 205 TGPGMFVHALQNGKPHHLASSWEFALLQHKKFTAIMMQFKTPPSYGSTIVNIGGIAMKDK 264

Query: 423 ILYQT 437
           I+  T
Sbjct: 265 IISAT 269


>SPBC146.11c |mug97|meu33|meiotically upregulated gene
           Mug97|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 335

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 16/43 (37%), Positives = 22/43 (51%)
 Frame = +3

Query: 444 YHHSTFGYDIPANKDGDYVLVLKFSEVYFSSPNMKVFDVVLNG 572
           YH     + +P +KD D  LV  +++ YFSS N      VL G
Sbjct: 173 YHKHYSRWYLPFDKDDDNQLVEAYAK-YFSSENRPSIFYVLQG 214


>SPAC15A10.03c |rhp54|rad54|Rad54 homolog Rhp54|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 852

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 14/66 (21%), Positives = 31/66 (46%)
 Frame = -1

Query: 227 KNADKSRHIVQSVIIQFTSFKPSDCMLKTSDVTV*YIVFLYFTLFMCTCFRNYAXQKRIV 48
           +N D     +  ++ +F   + +D + K   V   ++VF   + F  + ++++     I 
Sbjct: 489 ENGDAKLAELAKIVNRFIIRRTNDILSKYLPVKYEHVVFCNLSEFQLSLYKHFITSPEIN 548

Query: 47  KILRNS 30
           KILR +
Sbjct: 549 KILRGT 554


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,444,222
Number of Sequences: 5004
Number of extensions: 69708
Number of successful extensions: 164
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 154
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 164
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 471335896
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)