Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP06_F_K11
         (1078 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    33   0.069
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    31   0.37 
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    29   1.1  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    29   1.5  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    28   2.6  
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    23   4.2  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    27   4.5  
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1...    27   4.5  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 33.1 bits (72), Expect = 0.069
 Identities = 14/35 (40%), Positives = 14/35 (40%)
 Frame = +1

Query: 562 PPPPXXPXXPAXPXXGAPPPXXXGGGGGGXXXPPP 666
           P P   P  P  P  G PPP     G  G   PPP
Sbjct: 744 PAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPP 778



 Score = 31.1 bits (67), Expect = 0.28
 Identities = 15/38 (39%), Positives = 15/38 (39%), Gaps = 1/38 (2%)
 Frame = +1

Query: 556 GXPPPPXXPXXP-AXPXXGAPPPXXXGGGGGGXXXPPP 666
           G PPPP  P    A P    PPP     GG     P P
Sbjct: 760 GPPPPPPPPGVAGAGPPPPPPPPPAVSAGGSRYYAPAP 797



 Score = 29.1 bits (62), Expect = 1.1
 Identities = 13/27 (48%), Positives = 13/27 (48%)
 Frame = +3

Query: 771 PPPPPXXXGXGGGGGXXXXXGXPPPPP 851
           PPPPP   G  G G        PPPPP
Sbjct: 761 PPPPPPPPGVAGAG----PPPPPPPPP 783



 Score = 28.7 bits (61), Expect(2) = 0.19
 Identities = 10/19 (52%), Positives = 11/19 (57%)
 Frame = -3

Query: 665 GGGXXXPPPPPPXXXGGGA 609
           G G   PPPPPP    GG+
Sbjct: 772 GAGPPPPPPPPPAVSAGGS 790



 Score = 28.3 bits (60), Expect = 2.0
 Identities = 10/18 (55%), Positives = 10/18 (55%)
 Frame = -3

Query: 659 GXXXPPPPPPXXXGGGAP 606
           G   PPPPPP   G G P
Sbjct: 759 GGPPPPPPPPGVAGAGPP 776



 Score = 27.5 bits (58), Expect = 3.4
 Identities = 11/25 (44%), Positives = 11/25 (44%)
 Frame = +1

Query: 937  GGGPXXRXPXXXPPXXPPPPPXPXP 1011
            GG P    P       PPPPP P P
Sbjct: 759  GGPPPPPPPPGVAGAGPPPPPPPPP 783



 Score = 27.1 bits (57), Expect = 4.5
 Identities = 9/15 (60%), Positives = 9/15 (60%)
 Frame = -2

Query: 819 PPPXPPPXPXXGGGG 775
           PPP PPP P    GG
Sbjct: 775 PPPPPPPPPAVSAGG 789



 Score = 26.2 bits (55), Expect = 7.9
 Identities = 13/33 (39%), Positives = 13/33 (39%)
 Frame = -1

Query: 256 PXTPPXRXPXPRXGGPXLPPXXXGGXPXGPRGP 158
           P   P   P P  GGP  PP   G    GP  P
Sbjct: 746 PAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPP 778



 Score = 21.4 bits (43), Expect(2) = 0.19
 Identities = 8/20 (40%), Positives = 8/20 (40%)
 Frame = -3

Query: 815 PPXPPXXPXXGGGGGXXXXP 756
           PP PP  P   G G     P
Sbjct: 761 PPPPPPPPGVAGAGPPPPPP 780


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 30.7 bits (66), Expect = 0.37
 Identities = 11/20 (55%), Positives = 11/20 (55%)
 Frame = +1

Query: 562  PPPPXXPXXPAXPXXGAPPP 621
            PPPP  P  PA P    PPP
Sbjct: 1715 PPPPSAPPMPAGPPSAPPPP 1734



 Score = 28.3 bits (60), Expect = 2.0
 Identities = 15/42 (35%), Positives = 17/42 (40%), Gaps = 2/42 (4%)
 Frame = +3

Query: 339  PXGPXXWGXP-LKXPXPXXPPVX-PPPXXGPPXXXXXPRAXP 458
            P  P     P +  P P  PP+  PPP   PP     P A P
Sbjct: 1691 PVRPQSAAPPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPP 1732


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 29.1 bits (62), Expect = 1.1
 Identities = 11/17 (64%), Positives = 11/17 (64%)
 Frame = -2

Query: 615 GGAPXGXXGGXGGXGGG 565
           GG P G  GG GG GGG
Sbjct: 227 GGGPGGFEGGPGGFGGG 243



 Score = 29.1 bits (62), Expect = 1.1
 Identities = 11/17 (64%), Positives = 11/17 (64%)
 Frame = -2

Query: 615 GGAPXGXXGGXGGXGGG 565
           GG P G  GG GG GGG
Sbjct: 241 GGGPGGFGGGLGGFGGG 257



 Score = 27.1 bits (57), Expect = 4.5
 Identities = 16/43 (37%), Positives = 16/43 (37%), Gaps = 1/43 (2%)
 Frame = -1

Query: 463 PXGXARGXXXXXGGPXXGGGXTGG-XXGXGXLRGXPQXXGPXG 338
           P G   G     GGP   GG  GG   G G   G P   G  G
Sbjct: 230 PGGFEGGPGGFGGGPGGFGGGLGGFGGGPGGFGGGPGGHGGPG 272



 Score = 26.6 bits (56), Expect = 6.0
 Identities = 16/38 (42%), Positives = 16/38 (42%), Gaps = 1/38 (2%)
 Frame = -3

Query: 665 GGGXXXPPPPPPXXXGGGAPXXGXAGXXGXXGG-GGXP 555
           GGG    PPP P   GG     G     G  GG GG P
Sbjct: 194 GGGSGG-PPPGPGGFGGFGGFGGEGHHHGGHGGFGGGP 230



 Score = 26.6 bits (56), Expect = 6.0
 Identities = 10/16 (62%), Positives = 10/16 (62%)
 Frame = -2

Query: 612 GAPXGXXGGXGGXGGG 565
           G P G  GG GG GGG
Sbjct: 235 GGPGGFGGGPGGFGGG 250



 Score = 26.6 bits (56), Expect = 6.0
 Identities = 10/16 (62%), Positives = 10/16 (62%)
 Frame = -2

Query: 615 GGAPXGXXGGXGGXGG 568
           GG P G  GG GG GG
Sbjct: 255 GGGPGGFGGGPGGHGG 270


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
            Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 28.7 bits (61), Expect = 1.5
 Identities = 11/24 (45%), Positives = 11/24 (45%)
 Frame = +1

Query: 934  GGGGPXXRXPXXXPPXXPPPPPXP 1005
            G   P    P   PP  PPPPP P
Sbjct: 7    GNPPPPPPPPGFEPPSQPPPPPPP 30



 Score = 27.1 bits (57), Expect = 4.5
 Identities = 15/41 (36%), Positives = 16/41 (39%)
 Frame = +3

Query: 750 PXGXXXXPPPPPXXXGXGGGGGXXXXXGXPPPPPXXXXKKK 872
           P G    PPPPP         G       PPPPP    KK+
Sbjct: 5   PPGNPPPPPPPP---------GFEPPSQPPPPPPPGYVKKR 36



 Score = 26.2 bits (55), Expect = 7.9
 Identities = 9/17 (52%), Positives = 9/17 (52%)
 Frame = +2

Query: 566 PPPXPPXPPXXPXGAPP 616
           PPP PP P   P   PP
Sbjct: 9   PPPPPPPPGFEPPSQPP 25


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 27.9 bits (59), Expect = 2.6
 Identities = 11/27 (40%), Positives = 11/27 (40%)
 Frame = +1

Query: 772 PPPPPXXGXXGGXGGXXXXXGXPPPPP 852
           PPPPP     G           PPPPP
Sbjct: 339 PPPPPRSNAAGSIPLPPQGRSAPPPPP 365



 Score = 27.5 bits (58), Expect = 3.4
 Identities = 12/33 (36%), Positives = 13/33 (39%)
 Frame = +3

Query: 360 GXPLKXPXPXXPPVXPPPXXGPPXXXXXPRAXP 458
           G P   P P   P+ PP   G P     P A P
Sbjct: 442 GAPAAPPLPPSAPIAPPLPAGMPAAPPLPPAAP 474



 Score = 26.2 bits (55), Expect = 7.9
 Identities = 12/29 (41%), Positives = 12/29 (41%), Gaps = 2/29 (6%)
 Frame = +3

Query: 771 PPPPPXXXGXGGG--GGXXXXXGXPPPPP 851
           PPPPP     G    G        PPPPP
Sbjct: 313 PPPPPSRRNRGKPPIGNGSSNSSLPPPPP 341



 Score = 26.2 bits (55), Expect = 7.9
 Identities = 12/29 (41%), Positives = 12/29 (41%), Gaps = 2/29 (6%)
 Frame = +3

Query: 771 PPPPPXXXGXGGGGGXXXXXG--XPPPPP 851
           PPPPP       G       G   PPPPP
Sbjct: 337 PPPPPPPRSNAAGSIPLPPQGRSAPPPPP 365


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 23.0 bits (47), Expect(2) = 5.4
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = +1

Query: 973 PPXXPPPPP 999
           PP  PPPPP
Sbjct: 189 PPPPPPPPP 197



 Score = 23.0 bits (47), Expect(2) = 4.2
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = +1

Query: 985  PPPPPXPXP 1011
            PPPPP P P
Sbjct: 189  PPPPPPPPP 197



 Score = 22.2 bits (45), Expect(2) = 4.2
 Identities = 8/18 (44%), Positives = 8/18 (44%)
 Frame = +1

Query: 946 PXXRXPXXXPPXXPPPPP 999
           P    P    P  PPPPP
Sbjct: 179 PATSLPSDYNPPPPPPPP 196



 Score = 21.8 bits (44), Expect(2) = 5.4
 Identities = 7/12 (58%), Positives = 7/12 (58%)
 Frame = +1

Query: 976  PXXPPPPPXPXP 1011
            P  PPPPP   P
Sbjct: 236  PAPPPPPPPTLP 247


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 27.1 bits (57), Expect = 4.5
 Identities = 13/33 (39%), Positives = 14/33 (42%)
 Frame = +3

Query: 330  GXAPXGPXXWGXPLKXPXPXXPPVXPPPXXGPP 428
            G  P  P     P+  P    PPV PPP   PP
Sbjct: 1187 GVPPVPPPSEAPPVPKPSVGVPPV-PPPSTAPP 1218


>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1841

 Score = 27.1 bits (57), Expect = 4.5
 Identities = 9/16 (56%), Positives = 9/16 (56%)
 Frame = -2

Query: 819 PPPXPPPXPXXGGGGG 772
           PPP PPP P     GG
Sbjct: 945 PPPPPPPPPLVSAAGG 960


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.313    0.158    0.579 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,386,470
Number of Sequences: 5004
Number of extensions: 31978
Number of successful extensions: 320
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 236
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 565779688
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.6 bits)