Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP06_F_K11
         (1078 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       27   0.38 
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   4.7  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    23   6.2  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   8.2  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 26.6 bits (56), Expect = 0.38
 Identities = 14/38 (36%), Positives = 15/38 (39%), Gaps = 1/38 (2%)
 Frame = +1

Query: 556 GXPPPPXXPXX-PAXPXXGAPPPXXXGGGGGGXXXPPP 666
           G P P   P   P  P  G+PP    G   GG    PP
Sbjct: 19  GAPGPQPSPHQSPQAPQRGSPPNPSQGPPPGGPPGAPP 56


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 23.0 bits (47), Expect = 4.7
 Identities = 8/13 (61%), Positives = 8/13 (61%)
 Frame = -3

Query: 647  PPPPPPXXXGGGA 609
            PPPPPP    G A
Sbjct: 1355 PPPPPPPPSSGQA 1367



 Score = 22.2 bits (45), Expect = 8.2
 Identities = 7/12 (58%), Positives = 8/12 (66%)
 Frame = +2

Query: 761  RPXXPPPPPXXG 796
            +P  PPPPP  G
Sbjct: 1354 QPPPPPPPPSSG 1365


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
            channel protein.
          Length = 428

 Score = 22.6 bits (46), Expect = 6.2
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = +2

Query: 971  PPXXXPPPPP 1000
            PP   PPPPP
Sbjct: 338  PPKPAPPPPP 347



 Score = 22.2 bits (45), Expect = 8.2
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = +1

Query: 973  PPXXPPPPPXP 1005
            PP   PPPP P
Sbjct: 338  PPKPAPPPPPP 348



 Score = 22.2 bits (45), Expect = 8.2
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = -3

Query: 647 PPPPPPXXXG 618
           PPPPPP   G
Sbjct: 343 PPPPPPSSSG 352


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 22.2 bits (45), Expect = 8.2
 Identities = 8/19 (42%), Positives = 8/19 (42%)
 Frame = +1

Query: 943  GPXXRXPXXXPPXXPPPPP 999
            G     P    P  PPPPP
Sbjct: 1846 GSARNIPVSGSPEPPPPPP 1864



 Score = 22.2 bits (45), Expect = 8.2
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = -3

Query: 659  GXXXPPPPPP 630
            G   PPPPPP
Sbjct: 1855 GSPEPPPPPP 1864


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.313    0.158    0.579 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 269,529
Number of Sequences: 438
Number of extensions: 7721
Number of successful extensions: 23
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of database: 146,343
effective HSP length: 59
effective length of database: 120,501
effective search space used: 36029799
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.6 bits)