SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP06_F_K07
         (952 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81128-2|CAB03397.2|  232|Caenorhabditis elegans Hypothetical pr...    89   3e-18
Z68880-6|CAA93092.1|  308|Caenorhabditis elegans Hypothetical pr...    81   1e-15
Z69790-4|CAA93655.1|  282|Caenorhabditis elegans Hypothetical pr...    54   1e-07
AF039043-9|AAB94196.1|  427|Caenorhabditis elegans Tetraspanin f...    50   2e-06
AF039043-8|AAL02514.1|  451|Caenorhabditis elegans Tetraspanin f...    50   2e-06
AL132948-5|CAC51071.1|  321|Caenorhabditis elegans Hypothetical ...    48   7e-06
Z67734-1|CAA91527.2|  279|Caenorhabditis elegans Hypothetical pr...    46   5e-05
U41545-5|AAK39137.2|  243|Caenorhabditis elegans Tetraspanin fam...    43   3e-04
Z78415-6|CAH60758.1|  291|Caenorhabditis elegans Hypothetical pr...    41   0.001
U41028-2|AAA82355.1|  233|Caenorhabditis elegans Tetraspanin fam...    38   0.008
AL021487-1|CAA16352.4|  241|Caenorhabditis elegans Hypothetical ...    35   0.074
Z73908-1|CAA98130.2|  230|Caenorhabditis elegans Hypothetical pr...    34   0.17 
L14745-8|AAA27923.1|  244|Caenorhabditis elegans Tetraspanin fam...    34   0.17 
U28740-6|AAA68322.4|  317|Caenorhabditis elegans Tetraspanin fam...    33   0.30 
AL110487-3|CAB54426.1|  223|Caenorhabditis elegans Hypothetical ...    33   0.30 
L14745-7|AAK71354.1|  234|Caenorhabditis elegans Tetraspanin fam...    33   0.40 
Z81526-6|CAB04263.1| 2144|Caenorhabditis elegans Hypothetical pr...    31   1.2  
Z81086-1|CAB03120.2|  258|Caenorhabditis elegans Hypothetical pr...    31   1.6  
U64608-5|AAB04596.1|  393|Caenorhabditis elegans Hypothetical pr...    31   1.6  
U53332-2|AAK31532.1|  473|Caenorhabditis elegans Tetraspanin fam...    29   4.9  
Z66521-7|CAA91401.2|  387|Caenorhabditis elegans Hypothetical pr...    29   6.5  
X98132-1|CAA66831.1|  387|Caenorhabditis elegans N-acetyllactosa...    29   6.5  

>Z81128-2|CAB03397.2|  232|Caenorhabditis elegans Hypothetical
           protein T23D8.2 protein.
          Length = 232

 Score = 89.4 bits (212), Expect = 3e-18
 Identities = 46/166 (27%), Positives = 78/166 (46%), Gaps = 1/166 (0%)
 Frame = +3

Query: 153 LEGGMSCVKYLMFCFNLLFAITGLIILIVGIRAEINSYPYMNFT-DENFYKXXXXXXXXX 329
           +EGG++ VKYL+F  NL+  + GL ++IVG   ++     ++   DE             
Sbjct: 2   VEGGVTIVKYLLFLANLVLWVGGLSLIIVGSILQLKFDNVLDILGDERL--ATPILLLVI 59

Query: 330 XXXXXXXXXXXCCGAVKENHCMIITFSVFLLIIFVAELAVGIAGYMKHTDLEDSVMRNLN 509
                      CCGA++EN+C+ ++F+V L ++   E+A  I GY  H      +   L 
Sbjct: 60  GSLCTLLGFLGCCGAIRENYCLTVSFAVLLALLITCEIAAVIIGYALHDSFRLGIGNQLQ 119

Query: 510 ASITQYPVDKNVQKTIDIIQTDLQCCGINSPADWADHGLXIPSTCC 647
             + +Y   + V+   D      +CCG+ + +DW      IP +CC
Sbjct: 120 TGMVRYHESRGVESAWDKTHQLFECCGVTNSSDWLTF-TTIPDSCC 164


>Z68880-6|CAA93092.1|  308|Caenorhabditis elegans Hypothetical
           protein T14G10.6 protein.
          Length = 308

 Score = 81.0 bits (191), Expect = 1e-15
 Identities = 41/149 (27%), Positives = 69/149 (46%), Gaps = 2/149 (1%)
 Frame = +3

Query: 171 CVKYLMFCFNLLFAITGLIILIVGIRAEINSYPYMNFTDE--NFYKXXXXXXXXXXXXXX 344
           CVKY +F FN++F + G  +L+ G+ A+I    ++N   +    Y               
Sbjct: 37  CVKYSVFSFNVIFFLLGFGLLLFGVWAQIEKNTFVNMLSKASKLYLDPTWPLLIVGFLTF 96

Query: 345 XXXXXXCCGAVKENHCMIITFSVFLLIIFVAELAVGIAGYMKHTDLEDSVMRNLNASITQ 524
                 C G+++EN   +  +S  L ++ +AE + G+  Y     L++ +   LN  +  
Sbjct: 97  IIGFSGCVGSLRENTSFLTFYSTLLGLLLIAEFSAGVFAYACRDQLDNYIRNLLNDVVVG 156

Query: 525 YPVDKNVQKTIDIIQTDLQCCGINSPADW 611
           Y  D ++Q  ID +Q    CCGIN   DW
Sbjct: 157 YRDDPDLQLLIDSMQETWMCCGINGADDW 185


>Z69790-4|CAA93655.1|  282|Caenorhabditis elegans Hypothetical
           protein F33C8.3 protein.
          Length = 282

 Score = 53.6 bits (123), Expect(2) = 1e-07
 Identities = 31/154 (20%), Positives = 65/154 (42%), Gaps = 5/154 (3%)
 Frame = +3

Query: 165 MSCVKYLMFCFNLLFAITGLIILIVGI----RAEINSYPYMNFTDENFYKXXXXXXXXXX 332
           ++ ++ + F FN  F ++G+++  +GI        + +  ++ T    ++          
Sbjct: 5   VNALRIVTFLFNFAFWLSGVVVFGLGIWLLFDPAASDFFALHSTHPGAFRYVGWFLVGAG 64

Query: 333 XXXXXXXXXXCCGAVKENHCMIITFSVFLLIIFVAELAVGIAGYMKHTDLEDSVMRNLNA 512
                     C GA K N C +  F   L++ F  ELA  +  + K   ++  V  ++  
Sbjct: 65  AIIILVGYFGCIGAWKMNQCALAFFCCILILAFFLELAAAVTLFHKQEHIKHYVESSMYD 124

Query: 513 SI-TQYPVDKNVQKTIDIIQTDLQCCGINSPADW 611
           +I  +Y  +   +   D +Q   +CCG+ +  DW
Sbjct: 125 TIRNRYSSETAFKDAFDTVQEKFECCGVKTYTDW 158



 Score = 20.6 bits (41), Expect(2) = 1e-07
 Identities = 5/9 (55%), Positives = 8/9 (88%)
 Frame = +3

Query: 630 IPSTCCSAH 656
           +PS+CC+ H
Sbjct: 199 VPSSCCNEH 207


>AF039043-9|AAB94196.1|  427|Caenorhabditis elegans Tetraspanin
           family protein 14,isoform a protein.
          Length = 427

 Score = 50.4 bits (115), Expect = 2e-06
 Identities = 33/167 (19%), Positives = 78/167 (46%), Gaps = 4/167 (2%)
 Frame = +3

Query: 168 SCVKYLMFCFNLLFAITGLIILIVGIRAEINSYPYMNFTDENFYKXXXXXXXXXXXXXXX 347
           +C+K+L+F  N +  + G+ IL +G+   I  +  +   D                    
Sbjct: 28  ACLKWLVFLLNSIVFLVGVGILALGVYLFIKDFREVKLVD--IILNPAILISIFGFSICV 85

Query: 348 XXXXXCCGAVKENHCMIITFSVFLLIIFVAELAVGIAGY-MKHTDLEDSVMRN--LNASI 518
                  GA+++N  ++  F+  + + ++  +AV +  + + +TD  + +  N  L  ++
Sbjct: 86  VSFFGFMGALRDNIFLLKCFAACVFLSYILVVAVTLVFFTLFYTDTTEGLSANWLLLYAV 145

Query: 519 TQYPVDKNVQKTIDIIQTDLQCCGINSPAD-WADHGLXIPSTCCSAH 656
             Y  ++N+ + +D +Q +L+CCG++S A  + D  +     C +++
Sbjct: 146 KNYHTNRNLAEIMDALQENLECCGVSSIAQGYRDWNMSYQFNCTNSN 192


>AF039043-8|AAL02514.1|  451|Caenorhabditis elegans Tetraspanin
           family protein 14,isoform b protein.
          Length = 451

 Score = 50.4 bits (115), Expect = 2e-06
 Identities = 33/167 (19%), Positives = 78/167 (46%), Gaps = 4/167 (2%)
 Frame = +3

Query: 168 SCVKYLMFCFNLLFAITGLIILIVGIRAEINSYPYMNFTDENFYKXXXXXXXXXXXXXXX 347
           +C+K+L+F  N +  + G+ IL +G+   I  +  +   D                    
Sbjct: 52  ACLKWLVFLLNSIVFLVGVGILALGVYLFIKDFREVKLVD--IILNPAILISIFGFSICV 109

Query: 348 XXXXXCCGAVKENHCMIITFSVFLLIIFVAELAVGIAGY-MKHTDLEDSVMRN--LNASI 518
                  GA+++N  ++  F+  + + ++  +AV +  + + +TD  + +  N  L  ++
Sbjct: 110 VSFFGFMGALRDNIFLLKCFAACVFLSYILVVAVTLVFFTLFYTDTTEGLSANWLLLYAV 169

Query: 519 TQYPVDKNVQKTIDIIQTDLQCCGINSPAD-WADHGLXIPSTCCSAH 656
             Y  ++N+ + +D +Q +L+CCG++S A  + D  +     C +++
Sbjct: 170 KNYHTNRNLAEIMDALQENLECCGVSSIAQGYRDWNMSYQFNCTNSN 216


>AL132948-5|CAC51071.1|  321|Caenorhabditis elegans Hypothetical
           protein Y39B6A.6 protein.
          Length = 321

 Score = 48.4 bits (110), Expect = 7e-06
 Identities = 40/170 (23%), Positives = 70/170 (41%), Gaps = 14/170 (8%)
 Frame = +3

Query: 177 KYLMFCFNLLFAITGLIILIVGIRAEINSYPYMNFTDENFYKXXXXXXXXXXXXXXXXXX 356
           KY +F  N++F I G ++L +G+    +S  + NF  E + +                  
Sbjct: 58  KYGIFTANIVFLIVGGLLLAMGVWLRTDSR-FRNFISERYRQAVQEAFWEAPTLFAFSYI 116

Query: 357 XX-------------CCGAVKENHCMIITFSVFLLIIFVAELAVGIAGYMKHTDLEDSVM 497
                          CCG    +   +I +S+ + ++ VA L+ GI    K   L+  + 
Sbjct: 117 IIVLGAVMMVVAMLGCCGITGRSRPFLIIYSMVVFLLLVATLSCGIYLLYKKDGLDVELS 176

Query: 498 RNLNASITQYPVDKNV-QKTIDIIQTDLQCCGINSPADWADHGLXIPSTC 644
             LN  +  Y     V Q+++D +QT  +CCG    +D+      IP +C
Sbjct: 177 DALNYMVQHYYQGPGVVQESLDHLQTAFRCCGNAGCSDFRVFRQDIPRSC 226


>Z67734-1|CAA91527.2|  279|Caenorhabditis elegans Hypothetical
           protein B0198.1 protein.
          Length = 279

 Score = 45.6 bits (103), Expect = 5e-05
 Identities = 20/77 (25%), Positives = 38/77 (49%), Gaps = 1/77 (1%)
 Frame = +3

Query: 384 NHCMIITFSVFLLIIFVAELAVGIAGYMKHTDLEDSVMRNL-NASITQYPVDKNVQKTID 560
           N C ++ + + L+   + E  +    +  H   E  +  +L N  +  Y +D N+ K ++
Sbjct: 92  NRCALVFYLLMLIFSMIMEGCLIYFTFSYHATYEQELNASLPNDILNNYNLDPNIAKAVN 151

Query: 561 IIQTDLQCCGINSPADW 611
            +Q D +CCG N+  DW
Sbjct: 152 YLQRDSKCCGSNAFNDW 168


>U41545-5|AAK39137.2|  243|Caenorhabditis elegans Tetraspanin family
           protein 17 protein.
          Length = 243

 Score = 43.2 bits (97), Expect = 3e-04
 Identities = 27/89 (30%), Positives = 46/89 (51%), Gaps = 7/89 (7%)
 Frame = +3

Query: 366 CGAVKENHCMIITFSVFLLIIFVAELAVGIAGYMKHTDLEDSVMRNLNASI-------TQ 524
           CGAV  +  +++ F +FL+  F+A++A+G    + + D   SV  N+   +       T 
Sbjct: 46  CGAVNRSRFLLLAFVMFLIGTFLADVAMGTLS-LFYKDKVYSVKENVREIVKSKYGVMTS 104

Query: 525 YPVDKNVQKTIDIIQTDLQCCGINSPADW 611
            P +K V + ID +Q   +CCG   P D+
Sbjct: 105 EPENKMVTEFIDKLQFYEKCCGSLGPTDY 133


>Z78415-6|CAH60758.1|  291|Caenorhabditis elegans Hypothetical
           protein C17G1.8 protein.
          Length = 291

 Score = 41.1 bits (92), Expect = 0.001
 Identities = 24/91 (26%), Positives = 46/91 (50%), Gaps = 8/91 (8%)
 Frame = +3

Query: 399 ITFSVFLLIIF-VAELAVGIAGYMKHTDLEDSVMRNLN--ASITQYPVDKNVQKTIDIIQ 569
           I F + L+++  +A +   +       +L  S++ N+N  A +T+   +  +  T D +Q
Sbjct: 82  IGFVILLILVHGIARITGSLHKEEAKENLRKSMLHNINTTAVVTKIGREIKLSLTWDHLQ 141

Query: 570 TDLQCCGINSPADWA-----DHGLXIPSTCC 647
            +LQCCG+++  DW       + L  P +CC
Sbjct: 142 RELQCCGVDNYTDWHYSVHWPNNLYTPDSCC 172


>U41028-2|AAA82355.1|  233|Caenorhabditis elegans Tetraspanin family
           protein 9 protein.
          Length = 233

 Score = 38.3 bits (85), Expect = 0.008
 Identities = 21/76 (27%), Positives = 34/76 (44%)
 Frame = +3

Query: 363 CCGAVKENHCMIITFSVFLLIIFVAELAVGIAGYMKHTDLEDSVMRNLNASITQYPVDKN 542
           CCGA  E+  ++  F   ++I+   EL   +       +   S+ + L  S   Y + KN
Sbjct: 86  CCGAGCESPVLLGLFIFIIVILTAVELGATVFAMTNREEFVSSIQQVLKKSSATYELRKN 145

Query: 543 VQKTIDIIQTDLQCCG 590
           ++     IQ   QCCG
Sbjct: 146 IKP----IQNVFQCCG 157


>AL021487-1|CAA16352.4|  241|Caenorhabditis elegans Hypothetical
           protein Y45F10B.1 protein.
          Length = 241

 Score = 35.1 bits (77), Expect = 0.074
 Identities = 21/80 (26%), Positives = 39/80 (48%), Gaps = 2/80 (2%)
 Frame = +3

Query: 411 VFLLIIFVAELAVGIAGYMKHTD--LEDSVMRNLNASITQYPVDKNVQKTIDIIQTDLQC 584
           V + I+FV ++ V I  ++ + D    + V    +  +  Y  +   + T+D + T L+C
Sbjct: 99  VLVFIVFVVKI-VAIVMFLANNDHLRREFVGVYRDELVANYHNNSRTKNTLDWVHTSLKC 157

Query: 585 CGINSPADWADHGLXIPSTC 644
           CG N   D+   G   P++C
Sbjct: 158 CGANGCEDFLPAG-NFPTSC 176


>Z73908-1|CAA98130.2|  230|Caenorhabditis elegans Hypothetical
           protein F53B2.2 protein.
          Length = 230

 Score = 33.9 bits (74), Expect = 0.17
 Identities = 20/80 (25%), Positives = 39/80 (48%), Gaps = 2/80 (2%)
 Frame = +3

Query: 411 VFLLIIFVAELAVGIAGYMKHTD--LEDSVMRNLNASITQYPVDKNVQKTIDIIQTDLQC 584
           V + ++FV ++ V I  ++ + D    + V    +  +  Y  +   + T+D + T L+C
Sbjct: 88  VLVFLVFVVKI-VAIVMFLANKDHLRREFVGVYRDELVANYHNNSRTKNTLDWVHTSLKC 146

Query: 585 CGINSPADWADHGLXIPSTC 644
           CG N   D+   G   P++C
Sbjct: 147 CGANGCEDFLPAG-NFPTSC 165


>L14745-8|AAA27923.1|  244|Caenorhabditis elegans Tetraspanin family
           protein 1 protein.
          Length = 244

 Score = 33.9 bits (74), Expect = 0.17
 Identities = 18/68 (26%), Positives = 33/68 (48%)
 Frame = +3

Query: 396 IITFSVFLLIIFVAELAVGIAGYMKHTDLEDSVMRNLNASITQYPVDKNVQKTIDIIQTD 575
           +IT+ V ++++   E+  G+A  ++   L D+    ++A  T      N    + IIQ  
Sbjct: 101 MITYLVLIIVLVSLEIGCGVAVLVRRNSLHDNTNSLIDAMYT-----TNSVNDLKIIQDK 155

Query: 576 LQCCGINS 599
             CCGI +
Sbjct: 156 YNCCGIEN 163


>U28740-6|AAA68322.4|  317|Caenorhabditis elegans Tetraspanin family
           protein 11 protein.
          Length = 317

 Score = 33.1 bits (72), Expect = 0.30
 Identities = 16/45 (35%), Positives = 25/45 (55%)
 Frame = +3

Query: 144 TMALEGGMSCVKYLMFCFNLLFAITGLIILIVGIRAEINSYPYMN 278
           TM L      +K+ +F FNL+F + GLI L +G+   ++ Y   N
Sbjct: 8   TMPLSCTARALKFSLFIFNLVFLLCGLICLGIGLWLVLDKYAIDN 52


>AL110487-3|CAB54426.1|  223|Caenorhabditis elegans Hypothetical
           protein Y39E4B.4 protein.
          Length = 223

 Score = 33.1 bits (72), Expect = 0.30
 Identities = 19/74 (25%), Positives = 35/74 (47%)
 Frame = +3

Query: 369 GAVKENHCMIITFSVFLLIIFVAELAVGIAGYMKHTDLEDSVMRNLNASITQYPVDKNVQ 548
           GAV  +  ++  + +F++I+F+ E+A+GI   +K   +  +V   +  S      + N Q
Sbjct: 91  GAVIRSKYLLAPYFLFMVILFLLEIAIGITVLVKRRSVRRTVKEYVFDSF-----NMNAQ 145

Query: 549 KTIDIIQTDLQCCG 590
             I        CCG
Sbjct: 146 ADISAFNFRYNCCG 159


>L14745-7|AAK71354.1|  234|Caenorhabditis elegans Tetraspanin family
           protein 2 protein.
          Length = 234

 Score = 32.7 bits (71), Expect = 0.40
 Identities = 23/76 (30%), Positives = 34/76 (44%), Gaps = 1/76 (1%)
 Frame = +3

Query: 369 GAVKENHCMIITFSVFLLIIFVAELAVGIAGYMKHTDLEDSVMRNLN-ASITQYPVDKNV 545
           GA+ +   ++ T  V ++I F+ EL   IA + K   L   + R  N   +T    D   
Sbjct: 91  GAISQKKPVLATCLVLIVIFFIMELGGSIALWSKRGSLRSLLYRFANDIYLTNSVFD--- 147

Query: 546 QKTIDIIQTDLQCCGI 593
              I IIQ    CCG+
Sbjct: 148 ---ISIIQNTYNCCGV 160


>Z81526-6|CAB04263.1| 2144|Caenorhabditis elegans Hypothetical protein
            F33H2.5 protein.
          Length = 2144

 Score = 31.1 bits (67), Expect = 1.2
 Identities = 13/32 (40%), Positives = 20/32 (62%)
 Frame = -3

Query: 164  STFESHCYSIKYYRQIVLLRNKMIHTSANKAH 69
            +TF S C S K   ++  + NKM+H +A+ AH
Sbjct: 1941 ATFRSDCISQKISHRLYRIVNKMVHNNADIAH 1972


>Z81086-1|CAB03120.2|  258|Caenorhabditis elegans Hypothetical
           protein F53B6.1 protein.
          Length = 258

 Score = 30.7 bits (66), Expect = 1.6
 Identities = 29/116 (25%), Positives = 49/116 (42%), Gaps = 17/116 (14%)
 Frame = +3

Query: 378 KENHCMIITFSVFLLIIFVAELAVGIAGYMKHTDLEDSVMRNLN--ASITQ-YPVD--KN 542
           KE  C + + +V  ++I V  +  G  G      L      NL    S+ + Y     K 
Sbjct: 84  KEMRCFVTSCAVASIVIAVMLIIGGCIGLNFRDQLTHYTPLNLKMLTSLRELYGTHDMKG 143

Query: 543 VQKTIDIIQTDLQCCGIN--------SPADWADH----GLXIPSTCCSAHKIYKRR 674
           + ++ D +Q++ +CCG+N          + W  H     L IP +CC   +I + R
Sbjct: 144 ITESWDALQSNFKCCGVNGTDNAQIWKTSKWYMHQRAPKLLIPESCCIPSEIERCR 199


>U64608-5|AAB04596.1|  393|Caenorhabditis elegans Hypothetical
           protein T22B7.7 protein.
          Length = 393

 Score = 30.7 bits (66), Expect = 1.6
 Identities = 16/32 (50%), Positives = 19/32 (59%)
 Frame = -3

Query: 167 HSTFESHCYSIKYYRQIVLLRNKMIHTSANKA 72
           H T  SH Y +  YR I+ LR K+  TS NKA
Sbjct: 143 HQTSLSHGYGLSPYRDII-LRGKVTWTSENKA 173


>U53332-2|AAK31532.1|  473|Caenorhabditis elegans Tetraspanin family
           protein 18 protein.
          Length = 473

 Score = 29.1 bits (62), Expect = 4.9
 Identities = 16/73 (21%), Positives = 32/73 (43%), Gaps = 1/73 (1%)
 Frame = +3

Query: 402 TFSVFLLIIFVAELAVGIAGYMKHTDLEDSVMRN-LNASITQYPVDKNVQKTIDIIQTDL 578
           + S++LL +      +     ++ +   D+ M   L  +   Y      ++ +D I  + 
Sbjct: 102 SISIYLLCVSFMVCVLSYTLSLRISSEYDTKMTTILMTNYLNYNESMESRRLVDRIHIEY 161

Query: 579 QCCGINSPADWAD 617
            CCG+NS  D+ D
Sbjct: 162 SCCGVNSIEDFVD 174


>Z66521-7|CAA91401.2|  387|Caenorhabditis elegans Hypothetical
           protein W02B12.11 protein.
          Length = 387

 Score = 28.7 bits (61), Expect = 6.5
 Identities = 20/61 (32%), Positives = 35/61 (57%), Gaps = 1/61 (1%)
 Frame = +3

Query: 375 VKENHCMIITFSVFLLIIFVAELAVGIAGYMKHTDLEDSVMRNLNASITQY-PVDKNVQK 551
           ++ +HC+I +FS   LIIFVA   +     ++++ L D   R + A+  Q   V+ NVQ+
Sbjct: 1   MRTSHCIIRSFSPKRLIIFVAASTLIYVMLLRNSTLNDE--RRIAATEEQVRSVNVNVQQ 58

Query: 552 T 554
           +
Sbjct: 59  S 59


>X98132-1|CAA66831.1|  387|Caenorhabditis elegans
           N-acetyllactosamine synthase protein.
          Length = 387

 Score = 28.7 bits (61), Expect = 6.5
 Identities = 20/61 (32%), Positives = 35/61 (57%), Gaps = 1/61 (1%)
 Frame = +3

Query: 375 VKENHCMIITFSVFLLIIFVAELAVGIAGYMKHTDLEDSVMRNLNASITQY-PVDKNVQK 551
           ++ +HC+I +FS   LIIFVA   +     ++++ L D   R + A+  Q   V+ NVQ+
Sbjct: 1   MRTSHCIIRSFSPKRLIIFVAASTLIYVMLLRNSTLNDE--RRIAATEEQVRSVNVNVQQ 58

Query: 552 T 554
           +
Sbjct: 59  S 59


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,418,762
Number of Sequences: 27780
Number of extensions: 359252
Number of successful extensions: 994
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 960
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 990
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2465154230
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

- SilkBase 1999-2023 -