Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP06_F_K06
         (916 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC365.08c |||Der1-like |Schizosaccharomyces pombe|chr 2|||Manual     26   0.40 
SPAC24H6.13 |||DUF221 family protein|Schizosaccharomyces pombe|c...    29   0.70 
SPBC365.16 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    27   2.8  
SPAC3C7.01c ||SPAC732.03c|inositol polyphosphate phosphatase |Sc...    26   8.6  

>SPBC365.08c |||Der1-like |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 224

 Score = 25.8 bits (54), Expect(2) = 0.40
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = -1

Query: 520 LNVNVKYQYSQYQ*KVLFKHFHRYYIIYVI 431
           +N+   YQYS Y    +F    + YIIY++
Sbjct: 75  MNIYFFYQYSTYLENFVFARNAKKYIIYLV 104



 Score = 23.0 bits (47), Expect(2) = 0.40
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -1

Query: 571 LDLCSMISNSKFML*WPLNVNVKYQY 494
           L LC ++S S  +L +PL V  K  Y
Sbjct: 33  LTLCQLLSPSMLVLHYPLVVRQKQWY 58


>SPAC24H6.13 |||DUF221 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 871

 Score = 29.5 bits (63), Expect = 0.70
 Identities = 18/43 (41%), Positives = 21/43 (48%)
 Frame = +1

Query: 160 LVLRNICYLSIAIVFERFACVHVFLATFAYLYIYVGVEDHHND 288
           LV   ICY  IA +   FA V   L  FAY Y  + V  H+ D
Sbjct: 577 LVTIMICYSIIAPIIIGFAAVAFVLIYFAYSYNLIYVLGHNAD 619


>SPBC365.16 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 277

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = -2

Query: 441 FMLFVQTFSEVKMTLITIDTFDNISYKN 358
           F L    +S   MT  +IDT DNI +KN
Sbjct: 81  FALVFTLYSGTYMTANSIDTLDNIRHKN 108


>SPAC3C7.01c ||SPAC732.03c|inositol polyphosphate phosphatase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 611

 Score = 25.8 bits (54), Expect = 8.6
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = -1

Query: 271 PLQHKYINXXXXXXXXXXXQTSQIQSLLISNKYFSE 164
           PL + Y +             ++IQSLLI  KY++E
Sbjct: 335 PLSYVYYDYHKQGSRNLPLFLAEIQSLLIEGKYYAE 370


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,154,217
Number of Sequences: 5004
Number of extensions: 56077
Number of successful extensions: 99
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 98
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 99
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 464508080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)