Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP06_F_K05
         (928 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC651.05c |dot2||EAP30 family protein Dot2|Schizosaccharomyces...   108   1e-24
SPBC336.08 |spc24||spindle pole body protein Spc24|Schizosacchar...    29   1.2  
SPAC4F10.08 |mug126||sequence orphan|Schizosaccharomyces pombe|c...    28   1.6  
SPBC365.07c |||TATA element modulatory factor homolog |Schizosac...    28   2.1  
SPCC1393.02c |||non-specific DNA binding protein Spt2 |Schizosac...    27   3.8  
SPBC1703.05 |||protein kinase, RIO family|Schizosaccharomyces po...    27   5.0  
SPAC144.15c |cog1||Golgi transport complex subunit Cog1 |Schizos...    27   5.0  
SPCC1620.12c |||GTPase activating protein |Schizosaccharomyces p...    26   6.6  
SPBC1685.07c |||amino acid transporter |Schizosaccharomyces pomb...    26   6.6  
SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomy...    26   8.7  
SPCC4F11.04c |||mannosyltransferase complex subunit |Schizosacch...    26   8.7  

>SPBC651.05c |dot2||EAP30 family protein Dot2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 252

 Score =  108 bits (259), Expect = 1e-24
 Identities = 52/153 (33%), Positives = 92/153 (60%), Gaps = 2/153 (1%)
 Frame = +3

Query: 288 LGVGAIQKHRLEQEKYKEKGTEIQENQFQQMSKQLEVFRENLEDFASKHKSEIKKNAQFR 467
           +G+GA+      ++ Y+E G E+ E Q  +++ QL  F+E L+ FA +H +EIK+N+QFR
Sbjct: 5   IGIGALNDDEYLKQ-YEEVGNELIEQQSDEIASQLSTFQEALKTFAREHATEIKQNSQFR 63

Query: 468 RQFQEMCAAIGVDPLASG--KGFWSVLGIGDFYYELGVQIVEVCLATNYKNGGLITLEEL 641
             F ++   IG+DP  SG  +  W+ +G+ +FYY++ V+++EVC AT  +NGGL+++ ++
Sbjct: 64  NTFVKLALKIGLDPFVSGSDESAWAAVGMNEFYYQVAVRVIEVCYATQMENGGLLSVSQV 123

Query: 642 RTRLIASRGRAKKHQDITNEXLLXAXXX*RXLG 740
             R +     A  H+ +    ++ A      LG
Sbjct: 124 -CRFLNEENEAFGHEWLRETDVVRAVDSLAPLG 155


>SPBC336.08 |spc24||spindle pole body protein
           Spc24|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 198

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 17/65 (26%), Positives = 36/65 (55%), Gaps = 7/65 (10%)
 Frame = +3

Query: 294 VGAIQKHRLEQEKYKEKGTEIQENQFQQMSKQLEVFRENLEDF-----ASKHKSEI--KK 452
           +  IQ  R + + ++EK  E  + +F+ +S++LE+  + +E       +S+H  EI  ++
Sbjct: 25  ISNIQDIRAQIQSFREKELEGSQTKFKVLSRKLEISTQAMESLKQTAESSQHAEEILSRE 84

Query: 453 NAQFR 467
             +FR
Sbjct: 85  KEKFR 89


>SPAC4F10.08 |mug126||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 436

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 12/41 (29%), Positives = 23/41 (56%)
 Frame = +3

Query: 321 EQEKYKEKGTEIQENQFQQMSKQLEVFRENLEDFASKHKSE 443
           E +  K+K + +QE + Q   K+LE  +EN + ++   + E
Sbjct: 157 ESQTDKKKTSTVQEEELQNAGKKLETVQENPQAYSKVTQQE 197


>SPBC365.07c |||TATA element modulatory factor homolog
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 547

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 16/48 (33%), Positives = 24/48 (50%)
 Frame = +3

Query: 339 EKGTEIQENQFQQMSKQLEVFRENLEDFASKHKSEIKKNAQFRRQFQE 482
           E+  E  +NQ  QMSKQL    ++LE    +   EI+ +  F    +E
Sbjct: 189 ERERETFQNQVSQMSKQL----DSLEKLCERKDEEIRSSQAFNMTLRE 232


>SPCC1393.02c |||non-specific DNA binding protein Spt2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 406

 Score = 27.1 bits (57), Expect = 3.8
 Identities = 17/63 (26%), Positives = 34/63 (53%), Gaps = 2/63 (3%)
 Frame = +3

Query: 300 AIQKHRLEQEKYKEKGTEIQE--NQFQQMSKQLEVFRENLEDFASKHKSEIKKNAQFRRQ 473
           A+Q  +L + + +EK  EI E  N+ +++ ++ E+ ++  E+   +   E K+ A   RQ
Sbjct: 22  AVQIEQLRKAQIREKAREITEERNRQRKLQRERELRQKYEEEQRRQQAMEAKRIAASTRQ 81

Query: 474 FQE 482
             E
Sbjct: 82  TSE 84


>SPBC1703.05 |||protein kinase, RIO family|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 336

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 9/21 (42%), Positives = 16/21 (76%)
 Frame = +3

Query: 303 IQKHRLEQEKYKEKGTEIQEN 365
           ++K+R E+EK KE G ++ +N
Sbjct: 307 LEKYRQEEEKRKENGDDLSDN 327


>SPAC144.15c |cog1||Golgi transport complex subunit Cog1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 701

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 20/68 (29%), Positives = 33/68 (48%)
 Frame = +3

Query: 303 IQKHRLEQEKYKEKGTEIQENQFQQMSKQLEVFRENLEDFASKHKSEIKKNAQFRRQFQE 482
           IQ  +   ++ +EKG E+Q+N        +E   ENL    S  ++ ++K  Q   +FQ 
Sbjct: 27  IQLEKFVSQQIEEKGRELQQNVCFNYQSFIEA-SENL----SNIRNNLEKVLQNSYEFQS 81

Query: 483 MCAAIGVD 506
           M +   VD
Sbjct: 82  MVSLPKVD 89


>SPCC1620.12c |||GTPase activating protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 595

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 16/54 (29%), Positives = 28/54 (51%)
 Frame = +3

Query: 300 AIQKHRLEQEKYKEKGTEIQENQFQQMSKQLEVFRENLEDFASKHKSEIKKNAQ 461
           A+  HR+ + + +E  TEI +N    +  QLE   + LE+   +  S +K+  Q
Sbjct: 493 ALSNHRVTRSEMEE-ATEILKNNSADLKAQLEKQPQELENRLLQEISILKQRNQ 545


>SPBC1685.07c |||amino acid transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 420

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = -2

Query: 342 FLYISLVPICVFGLHLHQAMNMLISE 265
           F Y+S++P+ VFG   HQ    +I+E
Sbjct: 203 FGYLSVLPVFVFGFTCHQNAFSVINE 228


>SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 735

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 10/41 (24%), Positives = 24/41 (58%)
 Frame = +3

Query: 336 KEKGTEIQENQFQQMSKQLEVFRENLEDFASKHKSEIKKNA 458
           +EK  + +E + ++++ Q+E   E ++ FA    ++  K+A
Sbjct: 13  REKKRKEEEEEIEELNSQIEALSETVDHFAELPLTQPTKSA 53


>SPCC4F11.04c |||mannosyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 345

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = -3

Query: 383 RHLLELVFLYFCALFFIFLLFQSVFLDCTYTK 288
           RHL  ++   FC  F +  +F S  LD  Y +
Sbjct: 294 RHLAYVIVAGFCLYFILSYMFFSKLLDSRYVQ 325


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,348,637
Number of Sequences: 5004
Number of extensions: 70033
Number of successful extensions: 205
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 197
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 204
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 469338710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)