Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP06_F_K05
(928 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_06_0042 - 20443686-20443793,20444083-20444172,20444463-204445... 38 0.015
03_05_0176 + 21546952-21547887,21548856-21548921,21549959-215508... 31 0.98
09_06_0205 - 21567467-21567655,21567791-21567876,21567965-215680... 31 1.7
03_06_0528 - 34526038-34526164,34526250-34526500,34526584-345268... 30 2.3
01_03_0179 + 13500413-13500768,13502522-13502642,13502876-135029... 29 6.9
06_03_1475 - 30391555-30391890,30391982-30392233,30392358-303926... 28 9.2
04_03_0732 + 19095320-19095827,19095848-19096621,19096863-190969... 28 9.2
04_03_0153 + 11919769-11919880,11920190-11920488,11921909-119220... 28 9.2
02_05_0232 + 27041793-27042087,27042822-27042943,27043098-270432... 28 9.2
>09_06_0042 -
20443686-20443793,20444083-20444172,20444463-20444570,
20445144-20445206,20445685-20445795,20445886-20445955,
20447517-20447539
Length = 190
Score = 37.5 bits (83), Expect = 0.015
Identities = 23/83 (27%), Positives = 42/83 (50%), Gaps = 5/83 (6%)
Frame = +3
Query: 291 GVGAIQKHRLEQEKYKEKGTEIQENQFQQMSKQLEVFRENLEDFASKHK---SEIKKNAQ 461
G+ +Q +++++ G + + + M +QL FR LE+FA KHK E+K ++
Sbjct: 20 GIAGLQNAAATRDQFRLVGENVAKVRTDVMKEQLATFRTQLEEFARKHKVITIELKWHSI 79
Query: 462 FR--RQFQEMCAAIGVDPLASGK 524
F+ F M G + ++ GK
Sbjct: 80 FQLLSNFVYMVLGSGFEVISVGK 102
>03_05_0176 +
21546952-21547887,21548856-21548921,21549959-21550877,
21551277-21551449,21551927-21552475
Length = 880
Score = 31.5 bits (68), Expect = 0.98
Identities = 22/65 (33%), Positives = 35/65 (53%), Gaps = 9/65 (13%)
Frame = +3
Query: 312 HRLEQEKY--KEKGTEIQENQFQQMSKQLEVFR--ENLEDFASK-----HKSEIKKNAQF 464
H++ QEK+ ++K E Q+ QFQ SK+ E R + L + K + + K+NAQ
Sbjct: 762 HQMSQEKHHWQQKHREEQQQQFQNQSKEQEQERRMQKLRELRKKKNKRTQRRKRKQNAQV 821
Query: 465 RRQFQ 479
+Q Q
Sbjct: 822 MKQHQ 826
>09_06_0205 - 21567467-21567655,21567791-21567876,21567965-21568037,
21568267-21568326,21568887-21568935,21569328-21569431,
21569587-21569640,21569719-21569763,21569817-21569879,
21570415-21570615,21570620-21570797,21570900-21570993,
21571075-21572478,21572560-21572604,21572710-21572788,
21573424-21573589,21573679-21573771,21573872-21573929,
21574063-21574120,21574210-21574367,21575130-21575177,
21575269-21575320,21575404-21575529
Length = 1160
Score = 30.7 bits (66), Expect = 1.7
Identities = 15/52 (28%), Positives = 27/52 (51%)
Frame = +3
Query: 555 FYYELGVQIVEVCLATNYKNGGLITLEELRTRLIASRGRAKKHQDITNEXLL 710
FY + ++V V + T + I LEELR ++++ GR + D + +L
Sbjct: 925 FYVHILYEVVSVYMVTKHAADERIRLEELRRKVLSDDGRGITYLDSEEDLVL 976
>03_06_0528 -
34526038-34526164,34526250-34526500,34526584-34526804,
34526963-34527017
Length = 217
Score = 30.3 bits (65), Expect = 2.3
Identities = 12/46 (26%), Positives = 20/46 (43%)
Frame = -2
Query: 591 TPLLFALLAHSKNHQYQEQTRILSPKPVDPHRWQHTFPEIAF*TEH 454
+PL ++ + +H YQ + P P PH H +F +H
Sbjct: 116 SPLARTVMTRADDHPYQSYSHSEPPSPAAPHAGDHRHQRSSFAADH 161
>01_03_0179 + 13500413-13500768,13502522-13502642,13502876-13502998,
13504409-13504497,13504612-13504696,13504852-13505011,
13505096-13505160,13505296-13505349,13505437-13505527,
13505685-13505986,13506084-13506365,13506451-13506764,
13506920-13507080,13507202-13507305,13507379-13507535,
13507652-13507896,13507995-13508327,13508428-13508751,
13508816-13508899,13509001-13509169,13509610-13509731,
13510538-13510792,13511115-13511252
Length = 1377
Score = 28.7 bits (61), Expect = 6.9
Identities = 16/59 (27%), Positives = 30/59 (50%)
Frame = -3
Query: 482 FLKLPSELSILLYFTLVF*CKIFQIFPKHFQLFRHLLELVFLYFCALFFIFLLFQSVFL 306
F ++ EL +L TLV+ ++ + + + + + L F+YF L+F F +V L
Sbjct: 1245 FGQVAIELPYILVQTLVYGVLVYSMIGFEWTVAKFIWYLFFMYFTLLYFTFFGMMAVGL 1303
>06_03_1475 -
30391555-30391890,30391982-30392233,30392358-30392619,
30393232-30393320,30393408-30393592,30393673-30393781,
30393886-30393942,30394047-30394196
Length = 479
Score = 28.3 bits (60), Expect = 9.2
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = +1
Query: 328 RNIKKRAQKYKKTNSSRCRNNWKCLGKI 411
+NIKK ++ KKTN C N+ + L ++
Sbjct: 393 QNIKKHEKEKKKTNDDSCINSQQSLSRV 420
>04_03_0732 +
19095320-19095827,19095848-19096621,19096863-19096906,
19097191-19097250
Length = 461
Score = 28.3 bits (60), Expect = 9.2
Identities = 12/31 (38%), Positives = 15/31 (48%)
Frame = -2
Query: 918 PGGQYCGXLKRNPPGVSKSXGPFXXXKVXXP 826
P G G R+PP V+ S G F +V P
Sbjct: 70 PAGLTAGEFSRSPPSVAASDGAFLLLRVVFP 100
>04_03_0153 + 11919769-11919880,11920190-11920488,11921909-11922024,
11922113-11922248,11922959-11923006,11924130-11924228,
11924317-11924385,11924465-11924599,11924687-11924755,
11925221-11925276,11925465-11925624,11926534-11926698,
11927484-11927568,11927646-11927849,11928396-11928487,
11928571-11928613,11930727-11930884,11931520-11931630,
11931947-11932012,11933716-11933784,11934181-11934255,
11934330-11934506,11934598-11934683,11936259-11936313,
11936901-11936939,11938105-11938230,11938319-11938432,
11939208-11939265,11939485-11939623,11939698-11939783,
11939842-11940041
Length = 1148
Score = 28.3 bits (60), Expect = 9.2
Identities = 18/59 (30%), Positives = 24/59 (40%), Gaps = 2/59 (3%)
Frame = -1
Query: 535 DQNPFPEASGSTPMAAHIS*NCLLN*AFF--FISLLCFDAKSSKFSLNTSSCFDICWNW 365
++NP A G T H + CLL F + LL FD S + +C D W
Sbjct: 1064 EKNPLELAGGLTCSIMHTTVECLLQSLFLGGYRFLLSFDLLSPMPQFSEWTCIDTSTTW 1122
>02_05_0232 + 27041793-27042087,27042822-27042943,27043098-27043219,
27043601-27043705,27043828-27044257,27044356-27044517,
27044565-27045260,27045349-27046128,27046441-27046654,
27047621-27047981,27047993-27048140,27048276-27048419,
27048784-27048888,27049749-27049794,27050089-27050255,
27050338-27050490,27050654-27050950,27051053-27051220,
27051298-27051363,27051451-27051927,27052031-27052768,
27052935-27053120
Length = 1993
Score = 28.3 bits (60), Expect = 9.2
Identities = 16/58 (27%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
Frame = +3
Query: 294 VGAIQK-HRLEQEKYKE-KGTEIQENQFQQMSKQLEVFRENLEDFASKHKSEIKKNAQ 461
+ A++K H LE + E K E E F + ++++ + L S+H +EIK + +
Sbjct: 1522 LSALKKVHDLEHQYLNELKRREAVEETFARQKEEIQETKRELNKIRSRHMTEIKAHEE 1579
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,101,976
Number of Sequences: 37544
Number of extensions: 427393
Number of successful extensions: 1166
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1166
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2647531240
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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